ViewGene
Locus Name:
GeneID:
Location:

GeneID:5034
TrivialName: PA14_55040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55040
PAO1 Ortholog Locus:
Sequence Length:858
Protein Length:285
Start: 4887953
Stop: 4888810
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP16023.1| (AE016979) ATP-binding component of ferric enterobactin transport [Shigella flexneri 2a str. 2457T]
Identities = 129/260 (49%), Positives = 173/260 (66%), Gaps = 5/260 (1%)
Sequence:
ATGACGTTGGCGGTAAATCAGTTGAGGCTGAGCTACGGCTCGCGCGAAGTGCTCCGGGTGGCGGAGCTTCAA
TTCGAGCCCACCAGTATGGTGTGCCTGATCGGGCCCAACGGCTGCGGTAAGTCAACGTTGCTCAGGGCTCTC
GCAGGATTGAACAGGTCCACGGCGGGTGCTGTTTCCCTAGACGGAAAGCCGTTGGCTTCCTGGAGTCCGAAA
GCACTCGCCCGGCGGCTGGCCTTCCTTCCCCAATCGCCGGCCGTACCGCAGGGCGTCACCATACGCCAATTG
GTCGCCTATGGCCGCTACCCGCACCAGGGCCTGCTCGCGCGGCAATCCAACCACGACCGCGAAATTGTCGGG
TGGGCCATGGAGTCTACCGGCATCTCGCACTTGCAAGGCCGTGACATCGGCACGCTCTCCGGAGGCGAACGG
CAACGGGCATGGATCGCGATGATCCTGGCCCAGGAGTCGAGCATCGTCTTGCTGGACGAACCCACCACCTAC
CTGGACATGGGACACCAGGCGGAATTGATGGAACTGCTCGCGCACCTGCAGAGGACGCGCCAGTTGACCGTC
GTGATGGTTCTGCACGACCTCAACCAGGCTAGCCAATACGCCGACCGGCTGCTGGCTCTGCGAGACGGCCGG
ATCGTCGCCGACGGGGCACCACTCGACATCGTCGACTCCCGGCTGAGTGAGCGACTGTTCGGCCTCGTCACC
CAGCGGATCGACCGCACGAGTGCCGGAAGGCTCGTGCCGTACTGCCTGCCCGTTGGTCCCGCAACCGCGGGG
CGCCCCACTCACGAAGAAATGGCTGCAACCCCTACGGCTGAGCAGCCCGAGGTTTTGTCGTACTAA
Translation:
MTLAVNQLRLSYGSREVLRVAELQFEPTSMVCLIGPNGCGKSTLLRALAGLNRSTAGAVSLDGKPLASWSPK
ALARRLAFLPQSPAVPQGVTIRQLVAYGRYPHQGLLARQSNHDREIVGWAMESTGISHLQGRDIGTLSGGER
QRAWIAMILAQESSIVLLDEPTTYLDMGHQAELMELLAHLQRTRQLTVVMVLHDLNQASQYADRLLALRDGR
IVADGAPLDIVDSRLSERLFGLVTQRIDRTSAGRLVPYCLPVGPATAGRPTHEEMAATPTAEQPEVLSY*
AnnotationID:5039GeneID:5034
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 17:05:53
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ferric enterobactin transport
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1120, COG4604
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24050741|gb|AAN42151.1|  ATP-binding component of ferric enterobactin transport 
[Shigella flexneri 2a str. 301]
gi|30040290|gb|AAP16023.1|  ATP-binding component of ferric enterobactin transport 
[Shigella flexneri 2a str. 2457T]
     Length=271
     Score =  243 bits (620),  Expect = 5e-63
     Identities = 129/260 (49%), Positives = 173/260 (66%), Gaps = 5/260 (1%)

gi|16128571|ref|NP_415120.1|  ATP-binding component of ferric enterobactin 
transport [Escherichia coli K12]
gi|2506101|sp|P23878|FEPC_ECOLI  Ferric enterobactin transport ATP-binding protein fepC
     Length=271
     Score =  243 bits (619),  Expect = 7e-63
     Identities = 129/260 (49%), Positives = 172/260 (66%), Gaps = 5/260 (1%)






 
Structural Features:
COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 
[Inorganic ion transport and metabolism / Coenzyme metabolism].
             CD-Length = 258 residues, 100.0% aligned
             Score =  300 bits (771), Expect = 1e-82

COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].
             CD-Length = 252 residues,  91.3% aligned
             Score =  211 bits (540), Expect = 6e-56






   
Genomic Context:






   
Comment:
Part of a 6-gene cluster of possible ABC-type transporters (including PA14_54970, 
PA14_54980, PA14_55000, PA14_55020, PA14_55030, and PA14_55040).


















    ReferenceID:10068




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5034
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
192314
                           gb|AAC73689.1|
                           (AE000164) ATP-binding component of ferric enterobactin transport [Escherichia coli K12]
                           293
                           45.05
                           60.06
                           30
                           623.0
     

     
     
192311
                           gb|AAP16023.1|
                           (AE016979) ATP-binding component of ferric enterobactin transport [Shigella flexneri 2a str. 2457T]
                           293
                           45.05
                           60.40
                           30
                           624.0
     

     
     
192312
                           gb|AAN42151.1|AE015082_3
                           (AE015082) ferric enterobactin transport ATP-binding protein [Shigella flexneri 2a str. 301]
                           293
                           45.05
                           60.40
                           30
                           624.0
     

     
     
192317
                           gb|AAG54923.1|AE005238_9
                           (AE005238) ATP-binding component of ferric enterobactin transport [Escherichia coli O157:H7 EDL933]
                           293
                           44.70
                           59.72
                           30
                           613.0
     

     
     
192315
                           gb|AAN79150.1|AE016757_54
                           (AE016757) Ferric enterobactin transport ATP-binding protein fepC [Escherichia coli CFT073]
                           293
                           44.70
                           60.06
                           30
                           616.0
     

     






      

          
GC ORFID: 48036How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4158Glimmer Score: 

          
Start: 65954Stop: 65097

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4158 translation of PA4158Homolog Bit Score 218.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1470 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGTTGGCGGTAAATCAGTTGAGGCTGAGCTACGGCTCGCGCGAAGTGCTCCGGGTGGCGGAGCTTCAA 
TTCGAGCCCACCAGTATGGTGTGCCTGATCGGGCCCAACGGCTGCGGTAAGTCAACGTTGCTCAGGGCTCTC 
GCAGGATTGAACAGGTCCACGGCGGGTGCTGTTTCCCTAGACGGAAAGCCGTTGGCTTCCTGGAGTCCGAAA 
GCACTCGCCCGGCGGCTGGCCTTCCTTCCCCAATCGCCGGCCGTACCGCAGGGCGTCACCATACGCCAATTG 
GTCGCCTATGGCCGCTACCCGCACCAGGGCCTGCTCGCGCGGCAATCCAACCACGACCGCGAAATTGTCGGG 
TGGGCCATGGAGTCTACCGGCATCTCGCACTTGCAAGGCCGTGACATCGGCACGCTCTCCGGAGGCGAACGG 
CAACGGGCATGGATCGCGATGATCCTGGCCCAGGAGTCGAGCATCGTCTTGCTGGACGAACCCACCACCTAC 
CTGGACATGGGACACCAGGCGGAATTGATGGAACTGCTCGCGCACCTGCAGAGGACGCGCCAGTTGACCGTC 
GTGATGGTTCTGCACGACCTCAACCAGGCTAGCCAATACGCCGACCGGCTGCTGGCTCTGCGAGACGGCCGG 
ATCGTCGCCGACGGGGCACCACTCGACATCGTCGACTCCCGGCTGAGTGAGCGACTGTTCGGCCTCGTCACC 
CAGCGGATCGACCGCACGAGTGCCGGAAGGCTCGTGCCGTACTGCCTGCCCGTTGGTCCCGCAACCGCGGGG 
CGCCCCACTCACGAAGAAATGGCTGCAACCCCTACGGCTGAGCAGCCCGAGGTTTTGTCGTACTAA