ViewGene
Locus Name:
GeneID:
Location:

GeneID:5033
TrivialName: PA14_50910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50910
PAO1 Ortholog Locus:PA1038
Sequence Length:318
Protein Length:105
Start: 4524065
Stop: 4524382
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04427.1|AE004536_6 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/105 (97%), Positives = 104/105 (99%)
Sequence:
ATGCATTCGCTCGCCAGCTATATCCGCGCCATCCATGCCCTGCCCTCGCCAGTCTCGATAAGCGATGCGCAG
ATCGAAGAGCAACAGCGCTGCGAGGACGGCGTCGAGATCCACAGCTGCGAAGCGCTCTACCGTTTCGACAAC
GGCGTGCGCCTGCGCCAGCACTGCGAGCGCGACCTCCTGCCAAGCAGCGGGGCCTGCGAGGAATGCTGGATC
GGCTACGAAGTGCTGGATTTCGCCGGGCAGGAAATCAGCCCACGCCACAAGCACTTCGTCAACGCCTGCCAG
GAACGCTTCTGGTTGCGCATGCACGCCTGA
Translation:
MHSLASYIRAIHALPSPVSISDAQIEEQQRCEDGVEIHSCEALYRFDNGVRLRQHCERDLLPSSGACEECWI
GYEVLDFAGQEISPRHKHFVNACQERFWLRMHA*
AnnotationID:5038GeneID:5033
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1038
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10066




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5033
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7437
                           PA1038_tr
                           translation of PA1038
                           105
                           97.14
                           99.04
                           0
                           559.0
     

     
     
192310
                           gb|AAG04427.1|AE004536_6
                           (AE004536) hypothetical protein PA1038 [Pseudomonas aeruginosa PAO1]
                           105
                           97.14
                           99.04
                           0
                           559.0
     

     






      

          
GC ORFID: 48035How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1038Glimmer Score: 

          
Start: 429843Stop: 429526

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1038 translation of PA1038Homolog Bit Score 219.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCATTCGCTCGCCAGCTATATCCGCGCCATCCATGCCCTGCCCTCGCCAGTCTCGATAAGCGATGCGCAG 
ATCGAAGAGCAACAGCGCTGCGAGGACGGCGTCGAGATCCACAGCTGCGAAGCGCTCTACCGTTTCGACAAC 
GGCGTGCGCCTGCGCCAGCACTGCGAGCGCGACCTCCTGCCAAGCAGCGGGGCCTGCGAGGAATGCTGGATC 
GGCTACGAAGTGCTGGATTTCGCCGGGCAGGAAATCAGCCCACGCCACAAGCACTTCGTCAACGCCTGCCAG 
GAACGCTTCTGGTTGCGCATGCACGCCTGA