ViewGene
Locus Name:
GeneID:
Location:

GeneID:5032
TrivialName: PA14_46600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46600
PAO1 Ortholog Locus:
Sequence Length:807
Protein Length:268
Start: 4151058
Stop: 4151864
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16997.1| (AL646074) PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
Identities = 202/267 (75%), Positives = 233/267 (87%)
Sequence:
ATGCCCAACTTCCCAGTGGTCGTCATAACCGGCGTGTCATCAGGCATCGGTCGCACGGCGGCCGAACAGTTC
GCCGGACGCGGTTGCCGCGTGTTCGGCAGCGTGCGCAACCCGGCCACTGCGCAGGCCATCCCCGGTGTCGAG
CTGATTCACCTGGATATTCGTGACGAAGCCTCGATTCGCCAGAGCATCGAACATGTGATTGCAGAAGCTGGG
CGCATCGACGTACTGGTCAACAATGCTGGCACCACACTGCTCGGTGCGACAGAGGAAACCGCCATCGACGAG
GCCCAGGCGCTGTTCGACACCAACGTCTTCGGCGTCCTGCGCGTTACCCAGGCGGTACTGCCGCAGATGCGC
AAGCAAAGCGCAGGGCGCATCGTCAACGTCAGTTCGGTGCTCGGCTTCCTGCCAGCACCCTACATGGGCCTG
TACTCGGCTTCCAAACATGCAGTGGAGGGTTTGTCCGAGACCCTGGATCACGAGGTGCGGCGCTTCGGCATT
CGCGTCGCGTTGGTCGAGCCTTCGTTCACCAAGACCAGCCTCGACCTCAACGCGCCACAGGCCGCCCTGCGT
ATCGCTACCTACGACAGCGAGCGGGCAACCGTCTCCCAGGCCATCCAGATGAACGTGCAGAAGGCACCTTTG
CCCGATGCGGTCGCCGCGACCATCGTCGAGGCCGCCCTGGGCGCGTGGAAAATGCGCCACACCCCCAAAGGC
GAGGCCACCCTGCTCAGACGCCTGCGCCGCTTTATGCCGGCAGGCCCAGTCGACTCGGGCCTGCGCAAGACC
TTCGGCCTCGGCTGA
Translation:
MPNFPVVVITGVSSGIGRTAAEQFAGRGCRVFGSVRNPATAQAIPGVELIHLDIRDEASIRQSIEHVIAEAG
RIDVLVNNAGTTLLGATEETAIDEAQALFDTNVFGVLRVTQAVLPQMRKQSAGRIVNVSSVLGFLPAPYMGL
YSASKHAVEGLSETLDHEVRRFGIRVALVEPSFTKTSLDLNAPQAALRIATYDSERATVSQAIQMNVQKAPL
PDAVAATIVEAALGAWKMRHTPKGEATLLRRLRRFMPAGPVDSGLRKTFGLG*
AnnotationID:5037GeneID:5032
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 14:02:14
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase/reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106, COG0300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|17430234|emb|CAD16997.1|  PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
    Score =  403 bits (1036),  Expect = 3e-111
    Identities = 202/267 (75%), Positives = 233/267 (87%), Gaps = 0/267 (0%)
gi|71900036|ref|ZP_00682180.1|  Short-chain dehydrogenase/reductase SDR [Xylella fastidiosa Ann-1]
    Score =  379 bits (973),  Expect = 5e-104
    Identities = 192/268 (71%), Positives = 224/268 (83%), Gaps = 0/268 (0%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
        CD-Length = 247 residues,  89.1% aligned
        Score =  153 bits (389), Expect = 1e-38
COG0300, DltE, Short-chain dehydrogenases of various substrate specificities.
        CD-Length = 265 residues,  90.9% aligned
        Score =  134 bits (338), Expect = 1e-32







   
Genomic Context:






   
Comment:


















    ReferenceID:10064




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5032
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
192287
                           emb|CAD16997.1|
                           (AL646074) PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           268
                           75.37
                           86.94
                           0
                           1036.0
     

     
     
192288
                           gb|AAF84881.1|AE004023_17
                           (AE004023) oxidoreductase [Xylella fastidiosa 9a5c]
                           268
                           71.26
                           83.58
                           0
                           971.0
     

     
     
192289
                           gb|AAM39741.1|
                           (AE012140) oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           268
                           63.80
                           77.61
                           0
                           866.0
     

     
     
192290
                           gb|AAM35331.1|
                           (AE011671) oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
                           268
                           63.80
                           77.23
                           0
                           864.0
     

     
     
192291
                           dbj|BAB49861.1|
                           (AP003000) putative oxidoreductase [Mesorhizobium loti]
                           274
                           49.27
                           66.05
                           9
                           626.0
     

     






      

          
GC ORFID: 48034How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold8_revised_gene7604Glimmer Score: 

          
Start: 802851Stop: 802045

          
Length: 807


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold8_revised_gene7604 related to: gi|13471973|ref|NP_103540.1| (NC_002678) oxidoreductase [Mesorhizobium loti] dbj|BAB49326.1| (AP002999) oxidoreductase [Mesorhizobium loti]Homolog Bit Score 220.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACTTCCCAGTGGTCGTCATAACCGGCGTGTCATCAGGCATCGGTCGCACGGCGGCCGAACAGTTC 
GCCGGACGCGGTTGCCGCGTGTTCGGCAGCGTGCGCAACCCGGCCACTGCGCAGGCCATCCCCGGTGTCGAG 
CTGATTCACCTGGATATTCGTGACGAAGCCTCGATTCGCCAGAGCATCGAACATGTGATTGCAGAAGCTGGG 
CGCATCGACGTACTGGTCAACAATGCTGGCACCACACTGCTCGGTGCGACAGAGGAAACCGCCATCGACGAG 
GCCCAGGCGCTGTTCGACACCAACGTCTTCGGCGTCCTGCGCGTTACCCAGGCGGTACTGCCGCAGATGCGC 
AAGCAAAGCGCAGGGCGCATCGTCAACGTCAGTTCGGTGCTCGGCTTCCTGCCAGCACCCTACATGGGCCTG 
TACTCGGCTTCCAAACATGCAGTGGAGGGTTTGTCCGAGACCCTGGATCACGAGGTGCGGCGCTTCGGCATT 
CGCGTCGCGTTGGTCGAGCCTTCGTTCACCAAGACCAGCCTCGACCTCAACGCGCCACAGGCCGCCCTGCGT 
ATCGCTACCTACGACAGCGAGCGGGCAACCGTCTCCCAGGCCATCCAGATGAACGTGCAGAAGGCACCTTTG 
CCCGATGCGGTCGCCGCGACCATCGTCGAGGCCGCCCTGGGCGCGTGGAAAATGCGCCACACCCCCAAAGGC 
GAGGCCACCCTGCTCAGACGCCTGCGCCGCTTTATGCCGGCAGGCCCAGTCGACTCGGGCCTGCGCAAGACC 
TTCGGCCTCGGCTGA