ViewGene

Locus Name:
GeneID:
Location:

GeneID:5031
TrivialName: PA14_08180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08180
PAO1 Ortholog Locus:PA0630
Sequence Length:363
Protein Length:120
Start: 701295
Stop: 701657
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA97448.1| (AB045308) hypothetical protein [Pseudomonas aeruginosa]
Identities = 119/120 (99%), Positives = 119/120 (99%)
Sequence:
ATGAGCCGGCTCGCTCTGCTCCTGCCGGCCGTGTTGCTGGTCCTGCTGGCCGGCGCCTTGCTCGGCGGCGGC
CTGGTTGCCCGCCACTATCGTCCGCAACTGGAGGAGGCCCTGGGCCAACTCACTGCCAGCCGCGTCGCCAGC
GGCCAGCTCGAGGCTTTGCTCGATGAGCAGCAGCGCGCGCTGGCGGCGGTGCGGGCGAGCGCCGAGAGGCGC
GCGAAGGACGTCGAGCAGGCACTCGGCGAGGCCAGGGCGCAGGCCGCGGAGCAGTATGCCGCCGCCGTGCGT
CTGCTCCAGGAACCCGACATTGGTGTGGACTGCCAGGCGGCAGGTGCGGCGATCGACCGGGAGCTGGGACTA
TGA
Translation:
MSRLALLLPAVLLVLLAGALLGGGLVARHYRPQLEEALGQLTASRVASGQLEALLDEQQRALAAVRASAERR
AKDVEQALGEARAQAAEQYAAAVRLLQEPDIGVDCQAAGAAIDRELGL*
AnnotationID:5036GeneID:5031
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:03
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0630
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10062
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27203
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5031

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
192283 dbj|BAA97448.1| (AB045308) hypothetical protein [Pseudomonas aeruginosa] 120 99.16 99.16 0 564.0
192284 dbj|BAA83138.1| (AB030826) hypothetical protein [Pseudomonas aeruginosa] 120 99.16 99.16 0 564.0
7436 PA0630_tr translation of PA0630 120 98.33 98.33 0 560.0
192285 gb|AAG04019.1|AE004498_14 (AE004498) hypothetical protein PA0630 [Pseudomonas aeruginosa PAO1] 120 98.33 98.33 0 560.0
192286 dbj|BAA83169.1| (AB030825) hypothetical protein [Pseudomonas aeruginosa] 120 98.33 98.33 0 560.0
GC ORFID: 48033How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0630Glimmer Score:
Start: 6502638Stop: 6503000
Length: 363
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0630 translation of PA0630Homolog Bit Score 220.0
Other Homologs:
GC ORF Sequence
ATGAGCCGGCTCGCTCTGCTCCTGCCGGCCGTGTTGCTGGTCCTGCTGGCCGGCGCCTTGCTCGGCGGCGGC
CTGGTTGCCCGCCACTATCGTCCGCAACTGGAGGAGGCCCTGGGCCAACTCACTGCCAGCCGCGTCGCCAGC
GGCCAGCTCGAGGCTTTGCTCGATGAGCAGCAGCGCGCGCTGGCGGCGGTGCGGGCGAGCGCCGAGAGGCGC
GCGAAGGACGTCGAGCAGGCACTCGGCGAGGCCAGGGCGCAGGCCGCGGAGCAGTATGCCGCCGCCGTGCGT
CTGCTCCAGGAACCCGACATTGGTGTGGACTGCCAGGCGGCAGGTGCGGCGATCGACCGGGAGCTGGGACTA
TGA