ViewGene
Locus Name:
GeneID:
Location:

GeneID:5030
TrivialName: PA14_45410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45410
PAO1 Ortholog Locus:PA1473
Sequence Length:336
Protein Length:111
Start: 4044397
Stop: 4044732
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04862.1|AE004576_11 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/111 (99%), Positives = 110/111 (99%)
Sequence:
ATGAACAGAAAGCAGTCACCCGCCCCGCGCCAGGCCATCGCCCTGAGCTACGACGGCCAGGCCGCGCCGACC
CTTTCCGCCAAGGGCGACGCCGAACTGGCCGAGGCGATCCTGGCCATCGCCCGCGACTACGAGGTACCGATC
TACGAGAACGCCGAGCTGGTCCGCCTGCTCGCCCGCCTGGAACTCGGCGACGCCATTCCGGAAGCGCTGTAT
CGCACCATCGCCGAGATCATCGCCTTCGCCTGGCACCTGAAAGGCAAGTGTCCCGAGGGATTCGCGCCGGAC
GCCGAGGATGGCAACCAGATGCTGCTGCTCGGCGGTCCCGGCGACTGA
Translation:
MNRKQSPAPRQAIALSYDGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIPEALY
RTIAEIIAFAWHLKGKCPEGFAPDAEDGNQMLLLGGPGD*
AnnotationID:5035GeneID:5030
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:10
Gene Name:
Confidence Code:3
GeneProduct:putative FlhB domain protein
Cell Localization:()
Synonyms:PA1473
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2257
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57108.1| (AE016869) FlhB domain protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 107

 Score =  153 bits (386), Expect = 2e-37
 Identities = 77/89 (86%), Positives = 82/89 (92%)

>gb|AAN69908.1|AE016629_10 (AE016790) FlhB domain protein [Pseudomonas putida KT2440]
          Length = 112

 Score =  142 bits (358), Expect = 4e-34
 Identities = 70/85 (82%), Positives = 78/85 (91%)

>gb|AAN56198.1|AE015758_2 (AE015758) FlhB domain protein [Shewanella oneidensis MR-1]
          Length = 102

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 39/82 (47%), Positives = 55/82 (67%)






 
Structural Features:
COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of 
flagellar protein FhlB.
CD-Length = 92 residues, 100.0% aligned
Score =  107 bits (269), Expect = 3e-25
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 4/94 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10060




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37353




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5030_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5030
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7435
                           PA1473_tr
                           translation of PA1473
                           111
                           99.09
                           99.09
                           0
                           560.0
     

     
     
192280
                           gb|AAG04862.1|AE004576_11
                           (AE004576) hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
                           111
                           99.09
                           99.09
                           0
                           560.0
     

     
     
192281
                           gb|AAO57108.1|
                           (AE016869) FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           120
                           65.83
                           70.83
                           22
                           369.0
     

     
     
192282
                           gb|AAN69908.1|AE016629_10
                           (AE016790) FlhB domain protein [Pseudomonas putida KT2440]
                           126
                           59.52
                           67.46
                           29
                           353.0
     

     






      

          
GC ORFID: 48032How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1473Glimmer Score: 

          
Start: 909512Stop: 909177

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1473 translation of PA1473Homolog Bit Score 220.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2147 (ORF: BLASTX 152.0), t_PA1473 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGAAAGCAGTCACCCGCCCCGCGCCAGGCCATCGCCCTGAGCTACGACGGCCAGGCCGCGCCGACC 
CTTTCCGCCAAGGGCGACGCCGAACTGGCCGAGGCGATCCTGGCCATCGCCCGCGACTACGAGGTACCGATC 
TACGAGAACGCCGAGCTGGTCCGCCTGCTCGCCCGCCTGGAACTCGGCGACGCCATTCCGGAAGCGCTGTAT 
CGCACCATCGCCGAGATCATCGCCTTCGCCTGGCACCTGAAAGGCAAGTGTCCCGAGGGATTCGCGCCGGAC 
GCCGAGGATGGCAACCAGATGCTGCTGCTCGGCGGTCCCGGCGACTGA