ViewGene
Locus Name:
GeneID:
Location:

GeneID:503
TrivialName: PA14_54370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54370
PAO1 Ortholog Locus:PA0767
Sequence Length:1800
Protein Length:599
Start: 4822431
Stop: 4820632
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04156.1|AE004511_9 (AE004511) GTP-binding protein LepA [Pseudomonas aeruginosa PAO1]
Identities = 599/599 (100%), Positives = 599/599 (100%)
Sequence:
GTGAGCGACCTGAGCCATATCCGCAATTTCTCCATCATTGCCCATATCGACCATGGCAAGTCGACGCTGGCC
GATCGCTTCATCCAGATGTGCGGCGGTCTCTCCGATCGCGAAATGGAGGCCCAGGTCCTGGACTCCATGGAC
CTGGAGCGCGAGCGCGGGATCACCATCAAGGCCCACAGCGTGACCCTGCACTACAAGGCGCAGGACGGTAAG
ACCTACCAGCTCAACTTCATCGATACCCCCGGCCACGTCGACTTCACCTACGAAGTCAGCCGCTCGCTGGCC
GCCTGCGAGGGCGCGCTGCTGGTAGTGGACGCCGGCCAGGGCGTCGAGGCGCAGTCCGTCGCCAACTGCTAC
ACCGCCATCGAGCAGGGGCTGGAAGTGATGCCCGTGCTGAACAAGATGGACCTGCCCCAGGCCGAGCCGGAG
CGGGTGAAAGAGGAAATCGAGAGCATCATCGGCATCGACGCCACCGACGCCGTGGCCTGCAGCGCCAAGAGC
GGGATGGGCGTGCTGGAGGTGCTGGAGCGCCTGGTGACCGCCATCCCCGCCCCGGAAGGCGAGATCGAGGCG
CCGCTGCAGGCGCTGATCATCGACTCCTGGTTCGACAACTACCTCGGCGTGGTCTCGCTGGTGCGGGTGAAG
AACGGCCGGGTGAAGAAGGGCGACAAGATCCTGGTGAAGTCCACCGGCAAGGTCCACCAGGTGGACAGCGTC
GGGGTATTCACTCCGAAGCACACCGAGACCGTCGACCTGAAGGCGGGCGAGGTGGGCTTCATCATCGCCGGT
ATCAAGGATATCCACGGCGCGCCGGTGGGCGATACGCTGACCCTTAACAACACGCCGGACGTCGAGGTCCTG
CCGGGCTTCAAGCGGGTCAAGCCGCAGGTCTACGCGGGCCTGTTCCCGGTCAGCTCGGACGATTTCGAGGAC
TTCCGCGACGCCCTGCAGAAGCTGACCCTCAACGACTCGTCGCTGCAATACGAGCCGGAAAGCTCCGAAGCC
CTGGGCTTCGGCTTCCGTTGCGGCTTCCTCGGCATGCTGCACATGGAGATCATCCAGGAGCGCCTGGAGCGC
GAATACGACCTGGACCTGATCACCACCGCGCCCACGGTGGTCTTCGAGATCGTGCAGAAGAACGGCGAGATC
ATCTACGTCGATAACCCGTCCAAGCTCCCGGACCTGGCGTCCATCCAGGAAATGCGCGAACCGATCTGCCGC
GCCACCATCCTGGTGCCCAAGGACCACCTGGGCAACGTGATCACCCTGTGCATCGAGAAGCGCGGCGTGCAG
CGCGACATGCACTTCCTCAGCGGCCAGGTGCAGGTGGTCTACGACCTGCCGATGAACGAGGTGGTGCTCGAC
TTCTTCGATCGCCTCAAGTCCACCAGCCGCGGCTATGCTTCCCTGGACTACAGCTTCGATCGTTTCGAGCCG
TCCAACCTGGTTCGTCTCGACGTGCTGATCAATGGCGAGAAGGTCGACGCCCTCGCCCTGATCGTCCACCGC
GACAACGCCCCCTACAAGGGCCGCCAGCTGGTGGAGAAAATGAAGGAACTGATCCCGCGGCAGATGTTCGAC
GTGGCGATCCAGGCAGCCATCGGTGGGCAGATCATCGCCCGCTCGACGGTCAAGGCGCTCAGGAAGAACGTG
CTGGCCAAGTGTTACGGTGGCGACGTGAGCCGTAAACGCAAGCTGCTGGAGAAGCAGAAGGCTGGTAAGAAA
AGGATGAAGCAGGTCGGTAGCGTGGAAATTCCCCAGGAAGCCTTCCTCGCCGTGCTCAAAGTGGATAGCTAG
Translation:
MSDLSHIRNFSIIAHIDHGKSTLADRFIQMCGGLSDREMEAQVLDSMDLERERGITIKAHSVTLHYKAQDGK
TYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDLPQAEPE
RVKEEIESIIGIDATDAVACSAKSGMGVLEVLERLVTAIPAPEGEIEAPLQALIIDSWFDNYLGVVSLVRVK
NGRVKKGDKILVKSTGKVHQVDSVGVFTPKHTETVDLKAGEVGFIIAGIKDIHGAPVGDTLTLNNTPDVEVL
PGFKRVKPQVYAGLFPVSSDDFEDFRDALQKLTLNDSSLQYEPESSEALGFGFRCGFLGMLHMEIIQERLER
EYDLDLITTAPTVVFEIVQKNGEIIYVDNPSKLPDLASIQEMREPICRATILVPKDHLGNVITLCIEKRGVQ
RDMHFLSGQVQVVYDLPMNEVVLDFFDRLKSTSRGYASLDYSFDRFEPSNLVRLDVLINGEKVDALALIVHR
DNAPYKGRQLVEKMKELIPRQMFDVAIQAAIGGQIIARSTVKALRKNVLAKCYGGDVSRKRKLLEKQKAGKK
RMKQVGSVEIPQEAFLAVLKVDS*
AnnotationID:512GeneID:503
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:25
Gene Name:lepA
Confidence Code:2
GeneProduct:GTP-binding protein LepA
Cell Localization:()
Synonyms:PA0767
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Translation, post-translational modification, degradation.
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0481, LepA, Membrane GTPase LepA.  Score: 1057, 0.0
KOG0462, Elongation factor-type GTP-binding protein.  Score: 727, 0.0






   
Genomic Context:
The gene sequence lepA-lepB-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa. 
In E. coli, lepA and lepB are cotranscribed.






   
Comment:


















    ReferenceID:14149




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:503
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
887
                           PA0767_tr
                           translation of PA0767
                           599
                           99.99
                           99.99
                           0
                           3036.0
     

     
     
36464
                           gb|AAG04156.1|AE004511_9
                           (AE004511) GTP-binding protein LepA [Pseudomonas aeruginosa PAO1]
                           599
                           99.83
                           99.99
                           0
                           3033.0
     

     
     
36465
                           gb|AAN67053.1|AE016334_2
                           (AE016779) GTP-binding protein LepA [Pseudomonas putida KT2440]
                           599
                           89.31
                           95.32
                           0
                           2751.0
     

     
     
36466
                           gb|AAO57676.1|
                           (AE016871) GTP-binding protein LepA [Pseudomonas syringae pv. tomato str. DC3000]
                           599
                           88.48
                           94.65
                           4
                           2725.0
     

     
     
36468
                           gb|AAF95605.1|
                           (AE004316) GTP-binding protein LepA [Vibrio cholerae O1 biovar eltor str. N16961]
                           600
                           76.00
                           86.83
                           4
                           2366.0
     

     






      

          
GC ORFID: 43505How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0767Glimmer Score: 

          
Start: 131476Stop: 133275

          
Length: 1800


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0767 translation of PA0767Homolog Bit Score 1174.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6216 (ORF: BLASTX 1054.0), t_PA0767 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGACCTGAGCCATATCCGCAATTTCTCCATCATTGCCCATATCGACCATGGCAAGTCGACGCTGGCC 
GATCGCTTCATCCAGATGTGCGGCGGTCTCTCCGATCGCGAAATGGAGGCCCAGGTCCTGGACTCCATGGAC 
CTGGAGCGCGAGCGCGGGATCACCATCAAGGCCCACAGCGTGACCCTGCACTACAAGGCGCAGGACGGTAAG 
ACCTACCAGCTCAACTTCATCGATACCCCCGGCCACGTCGACTTCACCTACGAAGTCAGCCGCTCGCTGGCC 
GCCTGCGAGGGCGCGCTGCTGGTAGTGGACGCCGGCCAGGGCGTCGAGGCGCAGTCCGTCGCCAACTGCTAC 
ACCGCCATCGAGCAGGGGCTGGAAGTGATGCCCGTGCTGAACAAGATGGACCTGCCCCAGGCCGAGCCGGAG 
CGGGTGAAAGAGGAAATCGAGAGCATCATCGGCATCGACGCCACCGACGCCGTGGCCTGCAGCGCCAAGAGC 
GGGATGGGCGTGCTGGAGGTGCTGGAGCGCCTGGTGACCGCCATCCCCGCCCCGGAAGGCGAGATCGAGGCG 
CCGCTGCAGGCGCTGATCATCGACTCCTGGTTCGACAACTACCTCGGCGTGGTCTCGCTGGTGCGGGTGAAG 
AACGGCCGGGTGAAGAAGGGCGACAAGATCCTGGTGAAGTCCACCGGCAAGGTCCACCAGGTGGACAGCGTC 
GGGGTATTCACTCCGAAGCACACCGAGACCGTCGACCTGAAGGCGGGCGAGGTGGGCTTCATCATCGCCGGT 
ATCAAGGATATCCACGGCGCGCCGGTGGGCGATACGCTGACCCTTAACAACACGCCGGACGTCGAGGTCCTG 
CCGGGCTTCAAGCGGGTCAAGCCGCAGGTCTACGCGGGCCTGTTCCCGGTCAGCTCGGACGATTTCGAGGAC 
TTCCGCGACGCCCTGCAGAAGCTGACCCTCAACGACTCGTCGCTGCAATACGAGCCGGAAAGCTCCGAAGCC 
CTGGGCTTCGGCTTCCGTTGCGGCTTCCTCGGCATGCTGCACATGGAGATCATCCAGGAGCGCCTGGAGCGC 
GAATACGACCTGGACCTGATCACCACCGCGCCCACGGTGGTCTTCGAGATCGTGCAGAAGAACGGCGAGATC 
ATCTACGTCGATAACCCGTCCAAGCTCCCGGACCTGGCGTCCATCCAGGAAATGCGCGAACCGATCTGCCGC 
GCCACCATCCTGGTGCCCAAGGACCACCTGGGCAACGTGATCACCCTGTGCATCGAGAAGCGCGGCGTGCAG 
CGCGACATGCACTTCCTCAGCGGCCAGGTGCAGGTGGTCTACGACCTGCCGATGAACGAGGTGGTGCTCGAC 
TTCTTCGATCGCCTCAAGTCCACCAGCCGCGGCTATGCTTCCCTGGACTACAGCTTCGATCGTTTCGAGCCG 
TCCAACCTGGTTCGTCTCGACGTGCTGATCAATGGCGAGAAGGTCGACGCCCTCGCCCTGATCGTCCACCGC 
GACAACGCCCCCTACAAGGGCCGCCAGCTGGTGGAGAAAATGAAGGAACTGATCCCGCGGCAGATGTTCGAC 
GTGGCGATCCAGGCAGCCATCGGTGGGCAGATCATCGCCCGCTCGACGGTCAAGGCGCTCAGGAAGAACGTG 
CTGGCCAAGTGTTACGGTGGCGACGTGAGCCGTAAACGCAAGCTGCTGGAGAAGCAGAAGGCTGGTAAGAAA 
AGGATGAAGCAGGTCGGTAGCGTGGAAATTCCCCAGGAAGCCTTCCTCGCCGTGCTCAAAGTGGATAGCTAG