ViewGene
Locus Name:
GeneID:
Location:

GeneID:5029
TrivialName: PA14_50680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50680
PAO1 Ortholog Locus:PA1059
Sequence Length:348
Protein Length:115
Start: 4502461
Stop: 4502114
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04448.1|AE004537_13 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/115 (97%), Positives = 114/115 (99%)
Sequence:
ATGACTGACGAACCCCTGAGCCTGTGGGTGGAAATCCTCGTCTCGGCGTTCCTCCTGCTGGGCAGCGCCTTC
GTCCTGATCGGCGCGATCGGCCTGTACCGCCTGCCGGACTTCTTCATGCGCCTGCACGGGCCGACCAAGGCC
ACCACCCTCGGGGTCGGCGGGGTGATCGTCGCCTCGCTGATCTATTTCTCCAACCGCCAGGCGGGCATCAGC
CTGCATGAGCTGCTGATCAGCCTGTTCCTCTTCATCAGCGCTCCGGTCAGCGCCTACATGCTGGCCAAGGCC
GCGGTGCTGCAGCAGTTGCCGCTGGAGAAGAAGACTCGCGGCAAGCCCTGGGAGCAGTGA
Translation:
MTDEPLSLWVEILVSAFLLLGSAFVLIGAIGLYRLPDFFMRLHGPTKATTLGVGGVIVASLIYFSNRQAGIS
LHELLISLFLFISAPVSAYMLAKAAVLQQLPLEKKTRGKPWEQ*
AnnotationID:5034GeneID:5029
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1059, phaG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1320, pfam03334
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1320, MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit. Score: 105, 1e-24
pfam03334, PhaG_MnhG_YufB, Na+/H+ antiporter subunit. Score: 82.2, 1e-17






   
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog).






   
Comment:


















    ReferenceID:10058




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32213




  
Author/Investigator(s):
        Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.





  
Title:
        The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.




  
PubMed:
        98343795


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5029
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7434
                           PA1059_tr
                           translation of PA1059
                           115
                           97.39
                           99.13
                           0
                           561.0
     

     
     
192279
                           gb|AAG04448.1|AE004537_13
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           115
                           97.39
                           99.13
                           0
                           561.0
     

     






      

          
GC ORFID: 48031How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1059Glimmer Score: 

          
Start: 451447Stop: 451794

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1059 translation of PA1059Homolog Bit Score 220.0

          
Other Homologs:  t_PA1059 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGACGAACCCCTGAGCCTGTGGGTGGAAATCCTCGTCTCGGCGTTCCTCCTGCTGGGCAGCGCCTTC 
GTCCTGATCGGCGCGATCGGCCTGTACCGCCTGCCGGACTTCTTCATGCGCCTGCACGGGCCGACCAAGGCC 
ACCACCCTCGGGGTCGGCGGGGTGATCGTCGCCTCGCTGATCTATTTCTCCAACCGCCAGGCGGGCATCAGC 
CTGCATGAGCTGCTGATCAGCCTGTTCCTCTTCATCAGCGCTCCGGTCAGCGCCTACATGCTGGCCAAGGCC 
GCGGTGCTGCAGCAGTTGCCGCTGGAGAAGAAGACTCGCGGCAAGCCCTGGGAGCAGTGA