ViewGene
Locus Name:
GeneID:
Location:

GeneID:5028
TrivialName: PA14_07690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07690
PAO1 Ortholog Locus:PA0589
Sequence Length:333
Protein Length:110
Start: 662084
Stop: 661752
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03978.1|AE004495_2 (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/110 (99%), Positives = 109/110 (99%)
Sequence:
ATGAGCGACACCTTCCAGCGCATCGCCCCCGAACAGGCCCGCCAGCTCCGCGAAAACGGCGCCCAGGTGGTC
GACATCCGCGACCCGCAGAGCTTCGCTGTCGGCCATATCAGCGGCTCGCGGCACATCGACAACCACTCGGTG
GCGGACTTCATCGCCGCCGCCGACCTCGACGCTCCGCTGGTGGTGGTCTGCTACCACGGCAACTCCAGCCAG
AGCGCCGCCGCCTATTTCATCCAGCAGGGCTTCAGCGACGTCTACAGCCTCGACGGCGGCTTCGAGCTATGG
CGCAGCGTCTATCCCGCGGATACCAGCAGCGGCGAAGCGGAGTAG
Translation:
MSDTFQRIAPEQARQLRENGAQVVDIRDPQSFAVGHISGSRHIDNHSVADFIAAADLDAPLVVVCYHGNSSQ
SAAAYFIQQGFSDVYSLDGGFELWRSVYPADTSSGEAE*
AnnotationID:5033GeneID:5028
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:53
Gene Name:
Confidence Code:3
GeneProduct:putative thiosulfate/cyanide sulfurtransferase
Cell Localization:()
Synonyms:glpE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0607,smart00450,cd00158
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66029.1|AE016232_2 (AE016775) rhodanese domain protein [Pseudomonas putida KT2440]
          Length = 110

 Score =  168 bits (426), Expect = 5e-42
 Identities = 80/107 (74%), Positives = 93/107 (86%), Gaps = 1/107 (0%)

>gb|AAO54090.1| (AE016857) rhodanese-like domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 106

 Score =  153 bits (387), Expect = 2e-37
 Identities = 71/103 (68%), Positives = 84/103 (81%)

>gb|AAP19274.1| (AE016992) protein of glp regulon [Shigella flexneri 2a str. 2457T]
          Length = 108

 Score =  108 bits (270), Expect = 6e-24
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)






 
Structural Features:
COG0607, PspE, Rhodanese-related sulfurtransferase 
[Inorganic ion transport and metabolism]
CD-Length = 110 residues,  90.9% aligned
Score = 78.8 bits (193), Expect = 1e-16
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

smart00450, RHOD, Rhodanese Homology Domain
CD-Length = 110 residues, 100.0% aligned
Score = 71.0 bits (173), Expect = 3e-14
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

cd00158, RHOD, Rhodanese Homology Domain
CD-Length = 109 residues,  99.1% aligned
Score = 68.6 bits (167), Expect = 2e-13
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10056




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33878




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5028_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5028
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7433
                           PA0589_tr
                           translation of PA0589
                           110
                           99.09
                           99.09
                           0
                           564.0
     

     
     
192257
                           gb|AAG03978.1|AE004495_2
                           (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           110
                           99.09
                           99.09
                           0
                           564.0
     

     
     
192258
                           gb|AAN66029.1|AE016232_2
                           (AE016775) rhodanese domain protein [Pseudomonas putida KT2440]
                           111
                           73.87
                           86.48
                           2
                           429.0
     

     
     
192259
                           gb|AAO54090.1|
                           (AE016857) rhodanese-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           110
                           65.45
                           79.09
                           4
                           385.0
     

     
     
192270
                           emb|CAE12492.1|
                           (BX571859) Thiosulfate sulfurtransferase GlpE [Photorhabdus luminescens subsp. laumondii TTO1]
                           113
                           46.90
                           64.60
                           5
                           263.0
     

     






      

          
GC ORFID: 48030How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0589Glimmer Score: 

          
Start: 6463427Stop: 6463095

          
Length: 333


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0589 translation of PA0589Homolog Bit Score 221.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6758 (ORF: BLASTX 157.0), t_PA0589 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACACCTTCCAGCGCATCGCCCCCGAACAGGCCCGCCAGCTCCGCGAAAACGGCGCCCAGGTGGTC 
GACATCCGCGACCCGCAGAGCTTCGCTGTCGGCCATATCAGCGGCTCGCGGCACATCGACAACCACTCGGTG 
GCGGACTTCATCGCCGCCGCCGACCTCGACGCTCCGCTGGTGGTGGTCTGCTACCACGGCAACTCCAGCCAG 
AGCGCCGCCGCCTATTTCATCCAGCAGGGCTTCAGCGACGTCTACAGCCTCGACGGCGGCTTCGAGCTATGG 
CGCAGCGTCTATCCCGCGGATACCAGCAGCGGCGAAGCGGAGTAG