ViewGene
Locus Name:
GeneID:
Location:

GeneID:5027
TrivialName: PA14_14610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14610
PAO1 Ortholog Locus:PA3822
Sequence Length:339
Protein Length:112
Start: 1247147
Stop: 1247485
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07209.1|AE004799_15 (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGAGCTTTCTAATTCCCGCTGCCTACGCCGACGCAGCCGCTCCGGCAGCCGCTGGCCCGGCCGGCACCGGT
TTCGAGTGGGTCTTCCTGGTTGGTTTCCTGGTCATCTTCTACCTGATGATCTGGCGTCCCCAGGCCAAGCGC
GCCAAGGAACACAAGAACCTGCTGGGCAACCTGCAAAAAGGTGACGAAGTCGTCACTTCCGGCGGTATCGCC
GGCAAGGTGACCAAGGTCGCCGACGATTTCGTCGTCGTCGAGGTCTCCGACAACGTCGAGCTGAAGTTCCAG
AAGGCCGCGATTGCCGCGACCCTGCCGAAAGGCACCCTGAAAGCGATCTGA
Translation:
MSFLIPAAYADAAAPAAAGPAGTGFEWVFLVGFLVIFYLMIWRPQAKRAKEHKNLLGNLQKGDEVVTSGGIA
GKVTKVADDFVVVEVSDNVELKFQKAAIAATLPKGTLKAI*
AnnotationID:5032GeneID:5027
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 15:03:51
Gene Name:
Confidence Code:3
GeneProduct:putative preprotein translocase
Cell Localization:()
Synonyms:yajC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1862,pfam02699
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66459.1|AE016275_4 (AE016777) preprotein translocase, YajC subunit [Pseudomonas putida
           KT2440]
          Length = 111

 Score =  198 bits (504), Expect = 4e-51
 Identities = 100/112 (89%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

>gb|AAO54935.1| (AE016860) preprotein translocase, YajC subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 111

 Score =  192 bits (487), Expect = 4e-49
 Identities = 97/112 (86%), Positives = 102/112 (91%), Gaps = 1/112 (0%)








 
Structural Features:
COG1862, YajC, Preprotein translocase subunit YajC 
[Intracellular trafficking and secretion]
CD-Length = 97 residues,  99.0% aligned
Score =  119 bits (300), Expect = 1e-28
Identities = 48/96 (50%), Positives = 59/96 (61%)

pfam02699, YajC, Preprotein translocase subunit.
CD-Length = 84 residues,  92.9% aligned
Score = 88.3 bits (219), Expect = 3e-19
Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 1/78 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10054




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31735




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5027_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5027
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7432
                           PA3822_tr
                           translation of PA3822
                           112
                           99.99
                           99.99
                           0
                           564.0
     

     
     
192228
                           gb|AAG07209.1|AE004799_15
                           (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           564.0
     

     
     
192229
                           gb|AAN66459.1|AE016275_4
                           (AE016777) preprotein translocase, YajC subunit [Pseudomonas putida KT2440]
                           112
                           89.28
                           93.75
                           1
                           506.0
     

     
     
192230
                           gb|AAO54935.1|
                           (AE016860) preprotein translocase, YajC subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           112
                           86.60
                           91.07
                           1
                           489.0
     

     
     
192240
                           emb|CAC92425.1|
                           (AJ414155) putative membrane protein [Yersinia pestis CO92]
                           113
                           52.21
                           69.02
                           3
                           264.0
     

     






      

          
GC ORFID: 48029How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3822Glimmer Score: 

          
Start: 3706791Stop: 3706453

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3822 translation of PA3822Homolog Bit Score 221.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4509 (ORF: BLASTX 192.0), t_PA3822 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTTTCTAATTCCCGCTGCCTACGCCGACGCAGCCGCTCCGGCAGCCGCTGGCCCGGCCGGCACCGGT 
TTCGAGTGGGTCTTCCTGGTTGGTTTCCTGGTCATCTTCTACCTGATGATCTGGCGTCCCCAGGCCAAGCGC 
GCCAAGGAACACAAGAACCTGCTGGGCAACCTGCAAAAAGGTGACGAAGTCGTCACTTCCGGCGGTATCGCC 
GGCAAGGTGACCAAGGTCGCCGACGATTTCGTCGTCGTCGAGGTCTCCGACAACGTCGAGCTGAAGTTCCAG 
AAGGCCGCGATTGCCGCGACCCTGCCGAAAGGCACCCTGAAAGCGATCTGA