ViewGene

Locus Name:
GeneID:
Location:

GeneID:5026
TrivialName: PA14_16720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16720
PAO1 Ortholog Locus:PA3684
Sequence Length:348
Protein Length:115
Start: 1431928
Stop: 1432275
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07072.1|AE004788_2 (AE004788) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 115/115 (100%), Positives = 115/115 (100%)
Sequence:
ATGCGTATCGACGGACTTTCTTCCTCTTCGTTGCCGCTGGAGCGCAGCGCCCGACCGGGCTCCGCGGTCACG
CCGTATCGCGACGTGCAGCGCGAGGTCGAGGCGCGGCGCGAGCAGCCGGCGCCGGTTTCCGGCAGCCAGGGC
TTCGAGCAGGCGCCGCAGGCGCGCAAGGTCCAGGCCAGTTCGGCGGGCGGCGACAGCCTGCCGGTGAGCGCC
CGCGACCTGCTGGCGTTCCAGCGCCCGGTAAGCAGCCATGCGGCGATGGCCCTGGCCAGCTACAACTCCACC
GCCAGCCTCAACATCGACGCCGGCGCCGAGGATGTCCTCGGCCTCGACCTCTACGCCTGA
Translation:
MRIDGLSSSSLPLERSARPGSAVTPYRDVQREVEARREQPAPVSGSQGFEQAPQARKVQASSAGGDSLPVSA
RDLLAFQRPVSSHAAMALASYNSTASLNIDAGAEDVLGLDLYA*
AnnotationID:5031GeneID:5026
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3684
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10052
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27193
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5026

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7431 PA3684_tr translation of PA3684 115 99.99 99.99 0 563.0
192227 gb|AAG07072.1|AE004788_2 (AE004788) hypothetical protein PA3684 [Pseudomonas aeruginosa PAO1] 115 99.99 99.99 0 563.0
GC ORFID: 48028How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3684Glimmer Score:
Start: 3522009Stop: 3521662
Length: 348
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3684 translation of PA3684Homolog Bit Score 221.0
Other Homologs: t_PA3684 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTATCGACGGACTTTCTTCCTCTTCGTTGCCGCTGGAGCGCAGCGCCCGACCGGGCTCCGCGGTCACG
CCGTATCGCGACGTGCAGCGCGAGGTCGAGGCGCGGCGCGAGCAGCCGGCGCCGGTTTCCGGCAGCCAGGGC
TTCGAGCAGGCGCCGCAGGCGCGCAAGGTCCAGGCCAGTTCGGCGGGCGGCGACAGCCTGCCGGTGAGCGCC
CGCGACCTGCTGGCGTTCCAGCGCCCGGTAAGCAGCCATGCGGCGATGGCCCTGGCCAGCTACAACTCCACC
GCCAGCCTCAACATCGACGCCGGCGCCGAGGATGTCCTCGGCCTCGACCTCTACGCCTGA