ViewGene
Locus Name:
GeneID:
Location:

GeneID:5024
TrivialName: PA14_28130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28130
PAO1 Ortholog Locus:PA2780
Sequence Length:345
Protein Length:114
Start: 2436420
Stop: 2436076
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06168.1|AE004705_10 (AE004705) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGCTAGGTACCCGGCTAAAAGCCGCAAGAATCAGAGCGGGATACTCGCAGAAACAGTTGGGCATGCTGGTG
GGAATGGACGAGTTTTCCGCCAGCGCACGGATGAACCAATACGAACGCGAACGGCACTCCCCCAACATGCGG
ACTTCCGAACAGCTGGCCATGGTCCTCCAGGTCCCCATGGCCTACCTCTATTGCCCCGAGGACGAGCTGGCC
GAGCTCATCCTCAAGGTGTCCAGCCTGACACCCGAGTTCAAGAAAGAGCTGACGCGTTTCATCGAACAGTTG
CTCGCGGCCCAGGGATCCACCAGCCGCCAGCCTGTACGCACAAGGAGTGAACTGTGA
Translation:
MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELA
ELILKVSSLTPEFKKELTRFIEQLLAAQGSTSRQPVRTRSEL*
AnnotationID:5029GeneID:5024
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 02:02:27
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2780
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF93352.1| (AE004108) transcriptional regulator, putative [Vibrio cholerae]
          Length = 102

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 43/87 (49%), Positives = 61/87 (70%)

>gb|AAL21634.1| (AE008825) putative transcriptional regulator [Salmonella
          typhimurium LT2]
          Length = 118

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 40/77 (51%), Positives = 56/77 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10048




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27189




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5024
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7429
                           PA2780_tr
                           translation of PA2780
                           114
                           99.99
                           99.99
                           0
                           564.0
     

     
     
192164
                           gb|AAG06168.1|AE004705_10
                           (AE004705) hypothetical protein PA2780 [Pseudomonas aeruginosa PAO1]
                           114
                           99.99
                           99.99
                           0
                           564.0
     

     






      

          
GC ORFID: 48026How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2780Glimmer Score: 

          
Start: 2517506Stop: 2517850

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2780 translation of PA2780Homolog Bit Score 221.0

          
Other Homologs:  t_PA2780 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGGTACCCGGCTAAAAGCCGCAAGAATCAGAGCGGGATACTCGCAGAAACAGTTGGGCATGCTGGTG 
GGAATGGACGAGTTTTCCGCCAGCGCACGGATGAACCAATACGAACGCGAACGGCACTCCCCCAACATGCGG 
ACTTCCGAACAGCTGGCCATGGTCCTCCAGGTCCCCATGGCCTACCTCTATTGCCCCGAGGACGAGCTGGCC 
GAGCTCATCCTCAAGGTGTCCAGCCTGACACCCGAGTTCAAGAAAGAGCTGACGCGTTTCATCGAACAGTTG 
CTCGCGGCCCAGGGATCCACCAGCCGCCAGCCTGTACGCACAAGGAGTGAACTGTGA