ViewGene
Locus Name:
GeneID:
Location:

GeneID:5023
TrivialName: PA14_44960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44960
PAO1 Ortholog Locus:PA1506
Sequence Length:330
Protein Length:109
Start: 4008907
Stop: 4008578
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04895.1|AE004579_7 (AE004579) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGCACCGGGTCCTGTTCATCTGCAGCCGCAACCGCCTGCGTAGTCCCAGCGCCGAACGGCTGTTCGCCGAC
TGGCCGGGCGTCGAGACCGATTCCGCCGGGCTGGCGGCGGACGCCGAGACGCCCCTGGAGCGCGAGCAACTG
GAGTGGGCGACGCTGGTCGTCGTCATGGAGCGCCGCCACCGGCAGGCTCTGCTGCGCCGGCACGCCGCGGCG
ATGAAAGGCAAGCGCCTGGTCTGCCTGGATATCCCGGACGACTACGCCTACATGCAGGCGGAATTGCTGCAT
CTGCTGGAGCGCAAGGCGGGGCCTTTCCTTCGGCGGGACTGA
Translation:
MHRVLFICSRNRLRSPSAERLFADWPGVETDSAGLAADAETPLEREQLEWATLVVVMERRHRQALLRRHAAA
MKGKRLVCLDIPDDYAYMQAELLHLLERKAGPFLRRD*
AnnotationID:5028GeneID:5023
AnnotatorUID: diggins
Modification Date/Time: 2005-05-17 07:07:17
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatase
Cell Localization:()
Synonyms:PA1506
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4551
Secondary Functional Category(ies):
EC Number:3.1.3.48
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4551, COG4551, Predicted protein tyrosine phosphatase
CD-Length = 109 residues, 100.0% aligned
Score =  182 bits (462), Expect = 1e-47
Identities = 78/109 (71%), Positives = 91/109 (83%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10046




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37302




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5023_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5023
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7428
                           PA1506_tr
                           translation of PA1506
                           109
                           99.99
                           99.99
                           0
                           564.0
     

     
     
192157
                           gb|AAG04895.1|AE004579_7
                           (AE004579) hypothetical protein PA1506 [Pseudomonas aeruginosa PAO1]
                           109
                           99.99
                           99.99
                           0
                           564.0
     

     
     
192158
                           emb|CAD13534.1|
                           (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           109
                           63.30
                           77.98
                           2
                           371.0
     

     
     
192160
                           gb|AAM43216.1|
                           (AE012520) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           112
                           55.35
                           65.17
                           6
                           297.0
     

     
     
192163
                           gb|AAM38918.1|
                           (AE012057) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           112
                           50.89
                           63.39
                           4
                           267.0
     

     






      

          
GC ORFID: 48025How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1506Glimmer Score: 

          
Start: 945002Stop: 945331

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1506 translation of PA1506Homolog Bit Score 221.0

          
Other Homologs:  t_PA1506 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCGGGTCCTGTTCATCTGCAGCCGCAACCGCCTGCGTAGTCCCAGCGCCGAACGGCTGTTCGCCGAC 
TGGCCGGGCGTCGAGACCGATTCCGCCGGGCTGGCGGCGGACGCCGAGACGCCCCTGGAGCGCGAGCAACTG 
GAGTGGGCGACGCTGGTCGTCGTCATGGAGCGCCGCCACCGGCAGGCTCTGCTGCGCCGGCACGCCGCGGCG 
ATGAAAGGCAAGCGCCTGGTCTGCCTGGATATCCCGGACGACTACGCCTACATGCAGGCGGAATTGCTGCAT 
CTGCTGGAGCGCAAGGCGGGGCCTTTCCTTCGGCGGGACTGA