ViewGene
Locus Name:
GeneID:
Location:

GeneID:5022
TrivialName: PA14_16270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16270
PAO1 Ortholog Locus:PA3722
Sequence Length:351
Protein Length:116
Start: 1390481
Stop: 1390831
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07109.1|AE004791_6 (AE004791) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/116 (96%), Positives = 115/116 (99%)
Sequence:
ATGCACGCTACCGCCGGTTCTCCCCACGCCTCCCTGCCTGACAGCGATGTCGCCCTGCTGGCCAATATCCTG
GTCCTGGCGACACGCAACATGAACAACATGACCACCATGCTGGCGCACCTTTCGGTGGAACTCAGCCAGAGC
GAAGAGCCACGCCTGCAACGGGTCGGTCATCGGGTCCTGAACGAACTCTCGGAGCTGGGGGCCGCCCTGGAG
ACCCAGTGGGACCTGATCGGCGCGCTGTCGCGTTTCTCGCCCCTGCTCGATCGCACCCTGCCGCGCCAGGAA
CCCCTGGTCACCGAGATCCACCTCACCGATCTGCCGGGCCAGGCGCTGCCGCCCTCCGCCTGA
Translation:
MHATAGSPHASLPDSDVALLANILVLATRNMNNMTTMLAHLSVELSQSEEPRLQRVGHRVLNELSELGAALE
TQWDLIGALSRFSPLLDRTLPRQEPLVTEIHLTDLPGQALPPSA*
AnnotationID:5027GeneID:5022
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3722
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10044




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27185




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5022
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7427
                           PA3722_tr
                           translation of PA3722
                           116
                           96.55
                           99.13
                           0
                           566.0
     

     
     
192156
                           gb|AAG07109.1|AE004791_6
                           (AE004791) hypothetical protein PA3722 [Pseudomonas aeruginosa PAO1]
                           116
                           96.55
                           99.13
                           0
                           566.0
     

     






      

          
GC ORFID: 48024How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3722Glimmer Score: 

          
Start: 3563456Stop: 3563106

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3722 translation of PA3722Homolog Bit Score 222.0

          
Other Homologs:  t_PA3722 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGCTACCGCCGGTTCTCCCCACGCCTCCCTGCCTGACAGCGATGTCGCCCTGCTGGCCAATATCCTG 
GTCCTGGCGACACGCAACATGAACAACATGACCACCATGCTGGCGCACCTTTCGGTGGAACTCAGCCAGAGC 
GAAGAGCCACGCCTGCAACGGGTCGGTCATCGGGTCCTGAACGAACTCTCGGAGCTGGGGGCCGCCCTGGAG 
ACCCAGTGGGACCTGATCGGCGCGCTGTCGCGTTTCTCGCCCCTGCTCGATCGCACCCTGCCGCGCCAGGAA 
CCCCTGGTCACCGAGATCCACCTCACCGATCTGCCGGGCCAGGCGCTGCCGCCCTCCGCCTGA