ViewGene
Locus Name:
GeneID:
Location:

GeneID:5021
TrivialName: PA14_22570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22570
PAO1 Ortholog Locus:PA3221
Sequence Length:336
Protein Length:111
Start: 1964041
Stop: 1963706
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06609.1|AE004745_6 (AE004745) CsaA protein [Pseudomonas aeruginosa PAO1]
Identities = 111/111 (100%), Positives = 111/111 (100%)
Sequence:
ATGGACATCATCGAATGGCAGGATTTCGAACGCGTCGAACTGCGCGTCGGCACCATCCTCAGCGCCGCTCCC
AACCCCAAGGCACGCAAACCCGCCTATGTCCTCGAGGTCGACCTCGGACCGCTCGGCCTGCGCACCTCCAGC
GCGCAACTGACCGCACACTACCAGGCCGAGCAACTGGTCGGACGCCAGGTCCTCTGCGTCTGCAACTTCGCT
CCGAAGCAGATCGCCGGGGTGCGCTCGGAGGTCCTGGTCACCGGGGTCTACGATAGCGAGGACAAGGTGGTC
CTGGCCGGCTTCGACAAGCCCCTGCCCAACGGTGCGCGCCTGGCCTGA
Translation:
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFA
PKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA*
AnnotationID:5026GeneID:5021
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 15:03:24
Gene Name:csaA
Confidence Code:2
GeneProduct:CsaA protein
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:putative secretion chaperone
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC46918.1| (AL591790) PUTATIVE CHAPERONE PROTEIN [Sinorhizobium meliloti]
          Length = 113

 Score =  128 bits (321), Expect = 7e-30
 Identities = 64/110 (58%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

>gb|AAL51672.1| (AE009491) PROTEIN SECRETION CHAPERONIN CSAA [Brucella melitensis
           16M]
          Length = 115

 Score =  124 bits (312), Expect = 8e-29
 Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 1/108 (0%)

>gb|AAL43197.1| (AE009170) secretion chaperone [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 113

 Score =  118 bits (295), Expect = 7e-27
 Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 1/108 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10042




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27183




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32324




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5021_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5021
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7426
                           PA3221_tr
                           translation of PA3221
                           111
                           99.99
                           99.99
                           0
                           565.0
     

     
     
192140
                           gb|AAG06609.1|AE004745_6
                           (AE004745) CsaA protein [Pseudomonas aeruginosa PAO1]
                           111
                           99.99
                           99.99
                           0
                           565.0
     

     
     
192141
                           emb|CAE14102.1|
                           (BX571865) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           111
                           62.16
                           79.27
                           0
                           371.0
     

     
     
192142
                           gb|AAQ60323.1|
                           (AE016919) CsaA protein [Chromobacterium violaceum ATCC 12472]
                           114
                           60.52
                           74.56
                           3
                           357.0
     

     
     
192143
                           emb|CAC46918.1|
                           (AL591790) PUTATIVE CHAPERONE PROTEIN [Sinorhizobium meliloti]
                           113
                           56.63
                           72.56
                           2
                           321.0
     

     






      

          
GC ORFID: 48023How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3221Glimmer Score: 

          
Start: 2989890Stop: 2990225

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3221 translation of PA3221Homolog Bit Score 222.0

          
Other Homologs:  t_PA3221 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATCATCGAATGGCAGGATTTCGAACGCGTCGAACTGCGCGTCGGCACCATCCTCAGCGCCGCTCCC 
AACCCCAAGGCACGCAAACCCGCCTATGTCCTCGAGGTCGACCTCGGACCGCTCGGCCTGCGCACCTCCAGC 
GCGCAACTGACCGCACACTACCAGGCCGAGCAACTGGTCGGACGCCAGGTCCTCTGCGTCTGCAACTTCGCT 
CCGAAGCAGATCGCCGGGGTGCGCTCGGAGGTCCTGGTCACCGGGGTCTACGATAGCGAGGACAAGGTGGTC 
CTGGCCGGCTTCGACAAGCCCCTGCCCAACGGTGCGCGCCTGGCCTGA