ViewGene
Locus Name:
GeneID:
Location:

GeneID:5020
TrivialName: PA14_29280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29280
PAO1 Ortholog Locus:PA2694
Sequence Length:327
Protein Length:108
Start: 2533988
Stop: 2534314
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06082.1|AE004697_7 (AE004697) probable thioredoxin [Pseudomonas aeruginosa PAO1]
Identities = 107/108 (99%), Positives = 107/108 (99%)
Sequence:
ATGAAGACCCGATACAGCGCCGAGGCACCGGCGCGCGACGAACTGGACCGGCTCGCCGGTCCGACGCTGGTG
GAGTTCGGTACCGACTGGTGCGGCCATTGCCAGGCCGCCCAGCCGCTGCTGGCGGAAGTATTCGGCGACTAT
CCGGAGGTCGGCCACCTGAAGGTCGAGGACGGTCCCGGGCGCCGCCTGGGGCGCTCGTTCCAGGTCAAGCTG
TGGCCGACCTTCGTCTTTCTTCGCGACGGCCGGGAGGTAGCGCGGGTGGTTCGCCCCGGCAGCGCCAGCGTG
CTGGAAGAGGCGTTCGAAAGCCTGGTCGGCGAGGGCTGA
Translation:
MKTRYSAEAPARDELDRLAGPTLVEFGTDWCGHCQAAQPLLAEVFGDYPEVGHLKVEDGPGRRLGRSFQVKL
WPTFVFLRDGREVARVVRPGSASVLEEAFESLVGEG*
AnnotationID:5025GeneID:5020
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative thioredoxin
Cell Localization:()
Synonyms:trxA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00085
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM39401.1| (AE012102) thioredoxin [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 110

 Score =  122 bits (306), Expect = 4e-28
 Identities = 56/104 (53%), Positives = 71/104 (68%)

>gb|AAM35001.1| (AE011634) thioredoxin [Xanthomonas axonopodis pv. citri str. 306]
          Length = 109

 Score =  117 bits (294), Expect = 1e-26
 Identities = 53/100 (53%), Positives = 71/100 (71%)






 
Structural Features:
pfam00085, Thioredoxin
CD-Length = 108 residues,  80.6% aligned
Score = 57.9 bits (140), Expect = 2e-10
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10040




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36337




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5020_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5020
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7425
                           PA2694_tr
                           translation of PA2694
                           108
                           99.07
                           99.07
                           0
                           565.0
     

     
     
192136
                           gb|AAG06082.1|AE004697_7
                           (AE004697) probable thioredoxin [Pseudomonas aeruginosa PAO1]
                           108
                           99.07
                           99.07
                           0
                           565.0
     

     
     
192137
                           gb|AAM39401.1|
                           (AE012102) thioredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           110
                           50.90
                           64.54
                           2
                           303.0
     

     
     
192139
                           gb|AAQ59569.1|
                           (AE016916) probable thioredoxin-disulfide reductase [Chromobacterium violaceum ATCC 12472]
                           108
                           50.00
                           62.03
                           5
                           284.0
     

     
     
192138
                           gb|AAM35001.1|
                           (AE011634) thioredoxin [Xanthomonas axonopodis pv. citri str. 306]
                           117
                           47.00
                           61.53
                           17
                           289.0
     

     






      

          
GC ORFID: 48022How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2694Glimmer Score: 

          
Start: 2419938Stop: 2419612

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2694 translation of PA2694Homolog Bit Score 222.0

          
Other Homologs:  t_PA2694 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACCCGATACAGCGCCGAGGCACCGGCGCGCGACGAACTGGACCGGCTCGCCGGTCCGACGCTGGTG 
GAGTTCGGTACCGACTGGTGCGGCCATTGCCAGGCCGCCCAGCCGCTGCTGGCGGAAGTATTCGGCGACTAT 
CCGGAGGTCGGCCACCTGAAGGTCGAGGACGGTCCCGGGCGCCGCCTGGGGCGCTCGTTCCAGGTCAAGCTG 
TGGCCGACCTTCGTCTTTCTTCGCGACGGCCGGGAGGTAGCGCGGGTGGTTCGCCCCGGCAGCGCCAGCGTG 
CTGGAAGAGGCGTTCGAAAGCCTGGTCGGCGAGGGCTGA