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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08572.1|AE004931_9 (AE004931) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/596 (99%), Positives = 591/596 (99%)
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Sequence:
ATGGATTACCAGGCCCCCTTGCGCGACATGCGCTTCGTTCTCCATGAACTGTTCGATGTCGGCGCGCATTGC
GAACTGCTGGGCAACGGCATCGATCGCGAACTGATCGACGGCGTGCTCGAGGAAGGCGCGCGCTACACCGGC
CAGGTGGTGGCGCCGCTCAATCGCAACAGCGACGAGGAAGGCGCGAAGCTGAAGGACGGCGTGGTGACCACC
CCCACCGGCTTTCGCGAAGCCTACCGGCAGTACAGCGAGAACGGCTGGGCGAGCATGACCGGACCCACCGAG
TACGGCGGCCAGGGCTTCCCGCAGATGGTCTCCGCGTGTTTCCACGAGATGTTGATGGCCGCCAGCCTGTCC
TTCCGCGTCTATTCGGGGCTGACCGAGGGCGCCGTGCTGGCCCTGTACAAGCATGGCGACGAGGCGTTGCGG
CGCGACTACCTGGCCAAGCTGGTGAGCGGCGAATGGGCCGGCACCATGTGCCTGACCGAACCCCAGGCCGGC
ACCGACCTCGCCCTCCTGCGCACCCGCGCCGAGGCGCAGGCCGACGGCAGCTACGCGATCAGCGGCAGCAAG
ATCTTCATCAGCGGTGGCGAGCAGGACCTCACCGAGAACATCGTCCACCTGGTGCTGGCGCGCCTGGCGGAC
GCGCCGGCCGGGGTGAAGGGCATCAGTCTGTTCCTGGTGCCGAAGTTCGTCGCCAATCCCGATGGCTCCCTG
GGCGAGCGCAACAGCCTGGGGTGCGGCGCCATCGAGCACAAGATGGGGATCAAGGGCGCTTCCACCTGCGTG
ATGAACTTCGACGGCGCCAGGGGCTGGCTGCTGGGCCAGGCGAACCAGGGCCTGGCCTGCATGTTCACGATG
ATGAACGATGCGCGCTTCCAGGTCGGCCTGCAGGGCCTGGGTATCGCCGAACGGGCCTTCCAGGGCGCCCTC
GGCTACGCCCGCGAGCGCCTGCAGTCGCGCGCCCTGGTCGGCCCGCAGGCACCGGACAAGGCCGCCGACCCG
ATCATCGTGCACCCCGACGTACGGCGCATGCTGCTGACCCAGAAGACCCTGGTCGAAGGCTGCCGCATGCTG
GCGGCCTGCTGTGCACGCCAGCTCGACCTGGAACACGGCCATCCGGATGCCGACGGCCGGCGCGCGGCGACG
CGCCGTGCAGCGCTGCTGATCCCCATCGTCAAGGCCTTCCTTACCGATGTCGGCcAGGAAGTCGCCAGCCTC
GGCGTACAGGTCTATGGCGGTCACGGCTTCATCCGCGAATGGGGCATGGAGCAATTGATGCGCGACAGTCGC
ATCACCCAGaTCTACGAAGGCACCAATGGCATCCAGGCGCTCGATCTGGTCCGCCGCAAGCTGCTCGGCGAC
CAGGGCGGCGAACTGCTGGCGCTGCAAGGCGAACTGGCGGCGGCCagCGaGGCGCTGCAAGGGCGTGCTGCG
CTGGCGCCGCTGGTCGAGCCGGTGCTGCAACGCCTGGAAGAGTGGCGGCAGCTCACCGGCCAGGTACTCGaG
gCCTGCGCCCGCGATCCCCAGGAGATCGGCGCCACTTCCGTGGACTTCCTCCAGTACAGCGCCTACGTATTG
CTCGCGGCCCTCTGGTTGCAAGCCGCTGCACGAGCCCAGGAAGCGCTGGACGGCGGCTCCGGCGAGGGCGAT
TTCTATCGGGCCAAGCTGCGCAGCGCCGATTTCTACCTGCGGCGCATCCTGCCGCGGGCTAGCATGCACCGC
GAAGCCTTGCTCGGTGGCGCCGACTGCCTGATGGCCCTGCCCGAGGAGCATTTCTCGTTCTGA |
Translation:
MDYQAPLRDMRFVLHELFDVGAHCELLGNGIDRELIDGVLEEGARYTGQVVAPLNRNSDEEGAKLKDGVVTT
PTGFREAYRQYSENGWASMTGPTEYGGQGFPQMVSACFHEMLMAASLSFRVYSGLTEGAVLALYKHGDEALR
RDYLAKLVSGEWAGTMCLTEPQAGTDLALLRTRAEAQADGSYAISGSKIFISGGEQDLTENIVHLVLARLAD
APAGVKGISLFLVPKFVANPDGSLGERNSLGCGAIEHKMGIKGASTCVMNFDGARGWLLGQANQGLACMFTM
MNDARFQVGLQGLGIAERAFQGALGYARERLQSRALVGPQAPDKAADPIIVHPDVRRMLLTQKTLVEGCRML
AACCARQLDLEHGHPDADGRRAATRRAALLIPIVKAFLTDVGQEVASLGVQVYGGHGFIREWGMEQLMRDSR
ITQIYEGTNGIQALDLVRRKLLGDQGGELLALQGELAAASEALQGRAALAPLVEPVLQRLEEWRQLTGQVLE
ACARDPQEIGATSVDFLQYSAYVLLAALWLQAAARAQEALDGGSGEGDFYRAKLRSADFYLRRILPRASMHR
EALLGGADCLMALPEEHFSF* |
AnnotationID:511 | GeneID:502 |
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Modification Date/Time: |
2005-03-15 17:05:08 |
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GeneProduct: | putative acyl-CoA dehydrogenase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (13) Fatty acid and phospholipid metabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | energy metabolism |
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Homology: | >gb|AAN67662.1|AE016396_4 (AE016781) acyl-CoA dehydrogenase, putative [Pseudomonas putida
KT2440]
Length = 616
Score = 897 bits (2319), Expect = 0.0
Identities = 451/596 (75%), Positives = 499/596 (83%), Gaps = 5/596 (0%)
>gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 601
Score = 610 bits (1573), Expect = e-174
Identities = 311/595 (52%), Positives = 404/595 (67%), Gaps = 2/595 (0%)
>emb|CAD14001.1| (AL646059) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
[Ralstonia solanacearum]
Length = 595
Score = 584 bits (1505), Expect = e-166
Identities = 303/595 (50%), Positives = 399/595 (67%), Gaps = 6/595 (1%) |
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Structural Features: | cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues, 99.8% aligned
Score = 441 bits (1135), Expect = 1e-124
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues, 95.7% aligned
Score = 200 bits (511), Expect = 3e-52
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues, 89.3% aligned
Score = 195 bits (497), Expect = 1e-50
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GC ORFID: 43504 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA5187 | Glimmer Score: |
Start: 5376794 | Stop: 5375004 |
Length: 1791 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA5187 translation of PA5187 | Homolog Bit Score 1176.0 |
Other Homologs: t_PA0507 (ORF: BLASTX 647.0), t_PA4199 (ORF: BLASTX 621.0), t_PA0506 (ORF: BLASTX 615.0), t_PA0508 (ORF: BLASTX 615.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 593.0), t_PA1284 (ORF: BLASTX 545.0), t_PA5187 (ORF: GLIMMER) |
GC ORF Sequence |
ATGGATTACCAGGCCCCCTTGCGCGACATGCGCTTCGTTCTCCATGAACTGTTCGATGTCGGCGCGCATTGC GAACTGCTGGGCAACGGCATCGATCGCGAACTGATCGACGGCGTGCTCGAGGAAGGCGCGCGCTACACCGGC CAGGTGGTGGCGCCGCTCAATCGCAACAGCGACGAGGAAGGCGCGAAGCTGAAGGACGGCGTGGTGACCACC CCCACCGGCTTTCGCGAAGCCTACCGGCAGTACAGCGAGAACGGCTGGGCGAGCATGACCGGACCCACCGAG TACGGCGGCCAGGGCTTCCCGCAGATGGTCTCCGCGTGTTTCCACGAGATGTTGATGGCCGCCAGCCTGTCC TTCCGCGTCTATTCGGGGCTGACCGAGGGCGCCGTGCTGGCCCTGTACAAGCATGGCGACGAGGCGTTGCGG CGCGACTACCTGGCCAAGCTGGTGAGCGGCGAATGGGCCGGCACCATGTGCCTGACCGAACCCCAGGCCGGC ACCGACCTCGCCCTCCTGCGCACCCGCGCCGAGGCGCAGGCCGACGGCAGCTACGCGATCAGCGGCAGCAAG ATCTTCATCAGCGGTGGCGAGCAGGACCTCACCGAGAACATCGTCCACCTGGTGCTGGCGCGCCTGGCGGAC GCGCCGGCCGGGGTGAAGGGCATCAGTCTGTTCCTGGTGCCGAAGTTCGTCGCCAATCCCGATGGCTCCCTG GGCGAGCGCAACAGCCTGGGGTGCGGCGCCATCGAGCACAAGATGGGGATCAAGGGCGCTTCCACCTGCGTG ATGAACTTCGACGGCGCCAGGGGCTGGCTGCTGGGCCAGGCGAACCAGGGCCTGGCCTGCATGTTCACGATG ATGAACGATGCGCGCTTCCAGGTCGGCCTGCAGGGCCTGGGTATCGCCGAACGGGCCTTCCAGGGCGCCCTC GGCTACGCCCGCGAGCGCCTGCAGTCGCGCGCCCTGGTCGGCCCGCAGGCACCGGACAAGGCCGCCGACCCG ATCATCGTGCACCCCGACGTACGGCGCATGCTGCTGACCCAGAAGACCCTGGTCGAAGGCTGCCGCATGCTG GCGGCCTGCTGTGCACGCCAGCTCGACCTGGAACACGGCCATCCGGATGCCGACGGCCGGCGCGCGGCGACG CGCCGTGCAGCGCTGCTGATCCCCATCGTCAAGGCCTTCCTTACCGATGTCGGCcAGGAAGTCGCCAGCCTC GGCGTACAGGTCTATGGCGGTCACGGCTTCATCCGCGAATGGGGCATGGAGCAATTGATGCGCGACAGTCGC ATCACCCAGaTCTACGAAGGCACCAATGGCATCCAGGCGCTCGATCTGGTCCGCCGCAAGCTGCTCGGCGAC CAGGGCGGCGAACTGCTGGCGCTGCAAGGCGAACTGGCGGCGGCCagCGaGGCGCTGCAAGGGCGTGCTGCG CTGGCGCCGCTGGTCGAGCCGGTGCTGCAACGCCTGGAAGAGTGGCGGCAGCTCACCGGCCAGGTACTCGaG gCCTGCGCCCGCGATCCCCAGGAGATCGGCGCCACTTCCGTGGACTTCCTCCAGTACAGCGCCTACGTATTG CTCGCGGCCCTCTGGTTGCAAGCCGCTGCACGAGCCCAGGAAGCGCTGGACGGCGGCTCCGGCGAGGGCGAT TTCTATCGGGCCAAGCTGCGCAGCGCCGATTTCTACCTGCGGCGCATCCTGCCGCGGGCTAGCATGCACCGC GAAGCCTTGCTCGGTGGCGCCGACTGCCTGATGGCCCTGCCCGAGGAGCATTTCTCGTTCTGA |
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