ViewGene

Locus Name:
GeneID:
Location:

GeneID:5019
TrivialName: PA14_60010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60010
PAO1 Ortholog Locus:
Sequence Length:342
Protein Length:113
Start: 5344126
Stop: 5344467
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84142.1| (AY273869) hypothetical protein RL015 [Pseudomonas aeruginosa]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
ATGGCAGATACGCTCACCACCCGAAAGCTTCTCGGTCAGCTACTGGTCGGAGTGCTGATCGTCATCGGACTG
GCAGTGGTCGGTACGCTGCTCAGTCTCTTCGCCCTGAACCACTTCGGTGGCATCCAGGGCCTGGAGGCCTGG
CGGCAAAGCAACTACTGGAGCTTGTTCGCCTGGCGGGCGCTGCTGTACTGCGCCCTGGCCATCGCCTGGTTC
CGGCAGCGCAAGGAACTGAGCGCGCATGAGCGGCAGCGCATTCGGCGGATCGAGATCCTGGTGCTGTTGCTG
GTCCTGCTCATCGAATTCAGCAAAGCCTACTTCCGCACGGGAGGCGCAGCATGA
Translation:
MADTLTTRKLLGQLLVGVLIVIGLAVVGTLLSLFALNHFGGIQGLEAWRQSNYWSLFAWRALLYCALAIAWF
RQRKELSAHERQRIRRIEILVLLLVLLIEFSKAYFRTGGAA*
AnnotationID:5024GeneID:5019
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10038
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27179
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5019

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
192134 gb|AAP84142.1| (AY273869) hypothetical protein RL015 [Pseudomonas aeruginosa] 113 99.99 99.99 0 567.0
192135 gb|AAP94685.1| (AY258138) hypothetical protein [Pseudomonas aeruginosa] 115 94.78 98.26 2 548.0
GC ORFID: 48021How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL015Glimmer Score:
Start: 4607805Stop: 4608146
Length: 342
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL015 113 Homolog: No significant similarity () translation of RL015Homolog Bit Score 223.0
Other Homologs: t_RL015 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAGATACGCTCACCACCCGAAAGCTTCTCGGTCAGCTACTGGTCGGAGTGCTGATCGTCATCGGACTG
GCAGTGGTCGGTACGCTGCTCAGTCTCTTCGCCCTGAACCACTTCGGTGGCATCCAGGGCCTGGAGGCCTGG
CGGCAAAGCAACTACTGGAGCTTGTTCGCCTGGCGGGCGCTGCTGTACTGCGCCCTGGCCATCGCCTGGTTC
CGGCAGCGCAAGGAACTGAGCGCGCATGAGCGGCAGCGCATTCGGCGGATCGAGATCCTGGTGCTGTTGCTG
GTCCTGCTCATCGAATTCAGCAAAGCCTACTTCCGCACGGGAGGCGCAGCATGA