ViewGene
Locus Name:
GeneID:
Location:

GeneID:5017
TrivialName: PA14_15770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15770
PAO1 Ortholog Locus:PA3762
Sequence Length:318
Protein Length:105
Start: 1342925
Stop: 1343242
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07149.1|AE004795_1 (AE004795) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/105 (100%), Positives = 105/105 (100%)
Sequence:
ATGTACAAGCTGTGTTTCTATGTGCCTGAGAGCCATCTGGATGTCGTCAAGCAAGCGGTGTTTGCCGCGGGT
GGCGGGCGCATCGGGGCGTACGACAGTTGCTGCTGGCAGTCCCTTGGCCAGGGCCAGTTCCGGCCCCTGGAC
GGTAGCCAACCCTACCTGGGCCAGGTCGGCCAGGTCGAGCACGTGGCGGAGTGGAAAGTGGAGCTGGTGGTG
GCCGACGAGCTCATCCACGCCAGCGTCAAGGCGCTGAAGGCGGCGCATCCCTATGAGACCCCGGCCTACGAG
GTCTGGCGCCTGACCGACATGGTCTTCTGA
Translation:
MYKLCFYVPESHLDVVKQAVFAAGGGRIGAYDSCCWQSLGQGQFRPLDGSQPYLGQVGQVEHVAEWKVELVV
ADELIHASVKALKAAHPYETPAYEVWRLTDMVF*
AnnotationID:5022GeneID:5017
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3762
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10034




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27175




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31796




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5017_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5017
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7423
                           PA3762_tr
                           translation of PA3762
                           105
                           99.99
                           99.99
                           0
                           567.0
     

     
     
192029
                           gb|AAG07149.1|AE004795_1
                           (AE004795) hypothetical protein PA3762 [Pseudomonas aeruginosa PAO1]
                           105
                           99.99
                           99.99
                           0
                           567.0
     

     
     
192030
                           gb|AAN66663.1|AE016294_5
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           105
                           76.19
                           82.85
                           2
                           429.0
     

     
     
192031
                           gb|AAO54981.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           105
                           73.33
                           81.90
                           2
                           416.0
     

     
     
192032
                           gb|AAO91560.1|
                           (AE016966) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           105
                           54.28
                           70.47
                           0
                           317.0
     

     






      

          
GC ORFID: 48019How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3762Glimmer Score: 

          
Start: 3611012Stop: 3610695

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3762 translation of PA3762Homolog Bit Score 223.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4549 (ORF: BLASTX 163.0), t_PA3762 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGCTGTGTTTCTATGTGCCTGAGAGCCATCTGGATGTCGTCAAGCAAGCGGTGTTTGCCGCGGGT 
GGCGGGCGCATCGGGGCGTACGACAGTTGCTGCTGGCAGTCCCTTGGCCAGGGCCAGTTCCGGCCCCTGGAC 
GGTAGCCAACCCTACCTGGGCCAGGTCGGCCAGGTCGAGCACGTGGCGGAGTGGAAAGTGGAGCTGGTGGTG 
GCCGACGAGCTCATCCACGCCAGCGTCAAGGCGCTGAAGGCGGCGCATCCCTATGAGACCCCGGCCTACGAG 
GTCTGGCGCCTGACCGACATGGTCTTCTGA