ViewGene
Locus Name:
GeneID:
Location:

GeneID:5016
TrivialName: PA14_16000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16000
PAO1 Ortholog Locus:PA3742
Sequence Length:351
Protein Length:116
Start: 1362646
Stop: 1362996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07129.1|AE004793_6 (AE004793) 50S ribosomal protein L19 [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGACCAACAAGATCATTCAGCAGATCGAAGCTGAACAGATGAACAAAGAGATCCCGGCGTTCGCCCCCGGC
GACACCGTGATCGTCCAGGTCAAGGTGAAGGAAGGCGACCGTCAGCGTCTGCAGGCCTTCGAAGGCGTCGTC
ATCGCCAAGCGCAACCGTGGCCTGAACAGCGCCTTCACCGTGCGCAAGATCTCCAACGGCGTGGGCGTGGAA
CGTACCTTCCAGACCTACAGCCCGATCGTCGACAGCCTGAGCGTCAAGCGTCGCGGCGACGTGCGCAAGGCC
AAGCTGTACTACCTCCGCGCCCTGTCCGGCAAGGCCGCGCGCATCAAGGAAAAACTGGTCTAA
Translation:
MTNKIIQQIEAEQMNKEIPAFAPGDTVIVQVKVKEGDRQRLQAFEGVVIAKRNRGLNSAFTVRKISNGVGVE
RTFQTYSPIVDSLSVKRRGDVRKAKLYYLRALSGKAARIKEKLV*
AnnotationID:5021GeneID:5016
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 09:09:40
Gene Name:rplS
Confidence Code:2
GeneProduct:50S ribosomal protein L19
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0335,pfam01245
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54997.1| (AE016861) ribosomal protein L19 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 116

 Score =  200 bits (509), Expect = 1e-51
 Identities = 101/115 (87%), Positives = 108/115 (93%)

>gb|AAN81577.1|AE016764_259 (AE016764) 50S ribosomal protein L19 [Escherichia coli CFT073]
          Length = 115

 Score =  164 bits (415), Expect = 9e-41
 Identities = 83/113 (73%), Positives = 99/113 (87%)








 
Structural Features:
COG0335, RplS, Ribosomal protein L19 
[Translation, ribosomal structure and biogenesis]
CD-Length = 115 residues, 100.0% aligned
Score =  164 bits (417), Expect = 3e-42
Identities = 74/115 (64%), Positives = 91/115 (79%)

pfam01245, Ribosomal_L19, Ribosomal protein L19.
CD-Length = 113 residues, 100.0% aligned
Score =  141 bits (357), Expect = 2e-35
Identities = 71/113 (62%), Positives = 87/113 (76%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10032




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31816




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5016_cdd.html


    		




 
URL:

















    ReferenceID:34261




  
Author/Investigator(s):
        Jin S, Benedik MJ.





  
Title:
        Sequences of the Serratia marcescens rplS and trmD genes.




  
PubMed:
        8045416


MedLine:
        




    
Source:
Gene. 1994 Jul 22;145(1):147-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8045416

















    ReferenceID:34262




  
Author/Investigator(s):
        Bystrom AS, Hjalmarsson KJ, Wikstrom PM, Bjork GR.





  
Title:
        The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA(m1G)methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide.




  
PubMed:
        6357787


MedLine:
        




    
Source:
EMBO J. 1983;2(6):899-905.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6357787









           
Homologs By Global Alignment 

           

       



     
Gene ID:5016
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7422
                           PA3742_tr
                           translation of PA3742
                           116
                           99.99
                           99.99
                           0
                           568.0
     

     
     
191897
                           gb|AAG07129.1|AE004793_6
                           (AE004793) 50S ribosomal protein L19 [Pseudomonas aeruginosa PAO1]
                           116
                           99.99
                           99.99
                           0
                           568.0
     

     
     
191898
                           gb|AAN67087.1|AE016337_10
                           (AE016779) ribosomal protein L19 [Pseudomonas putida KT2440]
                           116
                           89.65
                           95.68
                           0
                           519.0
     

     
     
191899
                           gb|AAO54997.1|
                           (AE016861) ribosomal protein L19 [Pseudomonas syringae pv. tomato str. DC3000]
                           116
                           87.06
                           93.10
                           0
                           507.0
     

     
     
191900
                           gb|AAF93732.1|
                           (AE004142) ribosomal protein L19 [Vibrio cholerae O1 biovar eltor str. N16961]
                           118
                           77.11
                           88.98
                           3
                           455.0
     

     






      

          
GC ORFID: 48018How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3742Glimmer Score: 

          
Start: 3591291Stop: 3590941

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3742 translation of PA3742Homolog Bit Score 223.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4561 (ORF: BLASTX 200.0), t_PA3742 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAACAAGATCATTCAGCAGATCGAAGCTGAACAGATGAACAAAGAGATCCCGGCGTTCGCCCCCGGC 
GACACCGTGATCGTCCAGGTCAAGGTGAAGGAAGGCGACCGTCAGCGTCTGCAGGCCTTCGAAGGCGTCGTC 
ATCGCCAAGCGCAACCGTGGCCTGAACAGCGCCTTCACCGTGCGCAAGATCTCCAACGGCGTGGGCGTGGAA 
CGTACCTTCCAGACCTACAGCCCGATCGTCGACAGCCTGAGCGTCAAGCGTCGCGGCGACGTGCGCAAGGCC 
AAGCTGTACTACCTCCGCGCCCTGTCCGGCAAGGCCGCGCGCATCAAGGAAAAACTGGTCTAA