ViewGene

Locus Name:
GeneID:
Location:

GeneID:5014
TrivialName: PA14_21660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21660
PAO1 Ortholog Locus:PA3275
Sequence Length:330
Protein Length:109
Start: 1878054
Stop: 1878383
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06663.1|AE004750_1 (AE004750) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/109 (99%), Positives = 108/109 (99%)
Sequence:
GTGATCAACTACCTCTGGTTCGTCCTCGCGGCGTTCTGCGAGATCGCCGGCTGCTACGCCTTCTATCTCTGG
CTGCGGCTGGGCAAGAGCGCCCTGTGGGTGCTGCCCGGCCTGCTCAGCCTGACCCTGTTCGCCTTGCTGCTG
ACCCGCGTGGAGGCCAGCTACGCCGGCCGCGCCTATGCCGCCTATGGCGGCATCTACGTCGCCGCGTCGCTG
TTCTGGCTGGCTTTCGTCGAGCGCTCGCGGCCGCTATGGAGCGACTGGCTGGGCGTGGCCTTGTGCGTGGTC
GGTGCCAGCGTCGTGCTGTTCGGCCCGCGCCTGTCGCAGTGA
Translation:
MINYLWFVLAAFCEIAGCYAFYLWLRLGKSALWVLPGLLSLTLFALLLTRVEASYAGRAYAAYGGIYVAASL
FWLAFVERSRPLWSDWLGVALCVVGASVVLFGPRLSQ*
AnnotationID:5019GeneID:5014
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3275
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15240
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27169
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32271
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5014_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5014

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7420 PA3275_tr translation of PA3275 109 99.08 99.08 0 568.0
191886 gb|AAG06663.1|AE004750_1 (AE004750) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 109 98.16 99.08 0 565.0
191887 gb|AAO55148.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 110 72.72 85.45 1 443.0
191890 dbj|BAC92115.1| (AP006582) glr4174 [Gloeobacter violaceus PCC 7421] 109 57.79 70.64 2 308.0
191889 emb|CAE29279.1| (BX572605) Protein of unknown function UPF0060 [Rhodopseudomonas palustris CGA009] 110 54.54 71.81 1 313.0
GC ORFID: 48016How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3275Glimmer Score:
Start: 3075877Stop: 3075548
Length: 330
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3275 translation of PA3275Homolog Bit Score 223.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6395 (ORF: BLASTX 171.0), t_PA3275 (ORF: GLIMMER)
GC ORF Sequence
GTGATCAACTACCTCTGGTTCGTCCTCGCGGCGTTCTGCGAGATCGCCGGCTGCTACGCCTTCTATCTCTGG
CTGCGGCTGGGCAAGAGCGCCCTGTGGGTGCTGCCCGGCCTGCTCAGCCTGACCCTGTTCGCCTTGCTGCTG
ACCCGCGTGGAGGCCAGCTACGCCGGCCGCGCCTATGCCGCCTATGGCGGCATCTACGTCGCCGCGTCGCTG
TTCTGGCTGGCTTTCGTCGAGCGCTCGCGGCCGCTATGGAGCGACTGGCTGGGCGTGGCCTTGTGCGTGGTC
GGTGCCAGCGTCGTGCTGTTCGGCCCGCGCCTGTCGCAGTGA