ViewGene
Locus Name:
GeneID:
Location:

GeneID:5013
TrivialName: PA14_22770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22770
PAO1 Ortholog Locus:PA3203
Sequence Length:369
Protein Length:122
Start: 1979745
Stop: 1979377
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06591.1|AE004744_6 (AE004744) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/122 (95%), Positives = 117/122 (95%), Gaps = 2/122 (1%)
Sequence:
ATGATGCGTCCATCCACTGCCCATTGCCTGCTGCTGAGCCTGAGCCTGGGAGCTTCCCTGGCCCAGGCCGAG
GAACCCGCGCCAGCACCGATTCCAGCCGCGCAGCCTTCCATTGCGCAGGCTACCGCCGAACTGGAGCGCCGC
CTGGTGGAAACGGAACGCCAGCGCGACGAACTGGTCAGTCGTATGCGCCAGGAGAACCGCCAGTTGCGCGAG
CAGTTGCAGGCGGCCCAGGCGCAGCGGCAACCGCCGCTGCTCACAGAAGAGCAGACCTGGTATGTCGCCGGC
GCCGCCACCGCCCTGCTCGCGTTCGTCCTCGGCGCCCTGAGCCGCGGCCGCCGGCGACAGCGACGCGAATGG
ATCAATTGA
Translation:
MMRPSTAHCLLLSLSLGASLAQAEEPAPAPIPAAQPSIAQATAELERRLVETERQRDELVSRMRQENRQLRE
QLQAAQAQRQPPLLTEEQTWYVAGAATALLAFVLGALSRGRRRQRREWIN*
AnnotationID:5018GeneID:5013
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3203
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10026




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5013
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7419
                           PA3203_tr
                           translation of PA3203
                           122
                           95.90
                           95.90
                           2
                           569.0
     

     
     
191885
                           gb|AAG06591.1|AE004744_6
                           (AE004744) hypothetical protein PA3203 [Pseudomonas aeruginosa PAO1]
                           122
                           95.90
                           95.90
                           2
                           569.0
     

     






      

          
GC ORFID: 48015How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3203Glimmer Score: 

          
Start: 2974186Stop: 2974554

          
Length: 369


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3203 translation of PA3203Homolog Bit Score 223.0

          
Other Homologs:  t_PA3203 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGCGTCCATCCACTGCCCATTGCCTGCTGCTGAGCCTGAGCCTGGGAGCTTCCCTGGCCCAGGCCGAG 
GAACCCGCGCCAGCACCGATTCCAGCCGCGCAGCCTTCCATTGCGCAGGCTACCGCCGAACTGGAGCGCCGC 
CTGGTGGAAACGGAACGCCAGCGCGACGAACTGGTCAGTCGTATGCGCCAGGAGAACCGCCAGTTGCGCGAG 
CAGTTGCAGGCGGCCCAGGCGCAGCGGCAACCGCCGCTGCTCACAGAAGAGCAGACCTGGTATGTCGCCGGC 
GCCGCCACCGCCCTGCTCGCGTTCGTCCTCGGCGCCCTGAGCCGCGGCCGCCGGCGACAGCGACGCGAATGG 
ATCAATTGA