ViewGene
Locus Name:
GeneID:
Location:

GeneID:5011
TrivialName: PA14_30370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30370
PAO1 Ortholog Locus:PA2608
Sequence Length:336
Protein Length:111
Start: 2632276
Stop: 2631941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05996.1|AE004689_8 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/111 (99%), Positives = 110/111 (99%)
Sequence:
ATGACGCTCCTTACGCTGGAAGGCCGGGAAATCCGGCTGGACAAGGACGGCTACCTCGCCGCCCTCGACGAT
TGGTCGGAGCCGGTGGCGGAAGCCCTGGCCGCCCGCGAGGAGCTGGCCCTGACCGCCGAGCACTGGGAGATT
CTCCAACTGCTCCGCGAGTTCTATGCGGAGTTCCAGCTGTCTCCGGCCAACCGCCCGCTGATCAAGTACGTC
GCCCAGCGACTGGGTCCGGACAAGGGCAACAGCCTGCACCTCAACCACCTGTTCAAGGGCGCCCCGGCCAAG
CTTGGCGCGAAGCTGGCCGGCCTGCCGAAACCGAGCAACTGTCTATGA
Translation:
MTLLTLEGREIRLDKDGYLAALDDWSEPVAEALAAREELALTAEHWEILQLLREFYAEFQLSPANRPLIKYV
AQRLGPDKGNSLHLNHLFKGAPAKLGAKLAGLPKPSNCL*
AnnotationID:5016GeneID:5011
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:42
Gene Name:
Confidence Code:3
GeneProduct:putative desulfoviridin gamma subunit
Cell Localization:()
Synonyms:PA2608
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2920,pfam04358
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC23018.1| (U32817) desulfoviridin gamma subunit, putative [Haemophilus
           influenzae Rd]
          Length = 109

 Score =  120 bits (300), Expect = 2e-27
 Identities = 55/109 (50%), Positives = 72/109 (66%)

>gb|AAL20017.1| (AE008747) putative sulfite reductase, gamma subunit [Salmonella
           typhimurium LT2]
          Length = 109

 Score =  117 bits (294), Expect = 1e-26
 Identities = 55/109 (50%), Positives = 73/109 (66%)








 
Structural Features:
COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit 
[Inorganic ion transport and metabolism]
CD-Length = 111 residues, 100.0% aligned
Score =  165 bits (418), Expect = 2e-42
Identities = 62/111 (55%), Positives = 79/111 (71%)

pfam04358, DsrC, DsrC like protein.
CD-Length = 109 residues, 100.0% aligned
Score =  161 bits (410), Expect = 1e-41
Identities = 64/109 (58%), Positives = 81/109 (74%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10022




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33159




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5011_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5011
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7417
                           PA2608_tr
                           translation of PA2608
                           111
                           99.09
                           99.09
                           0
                           567.0
     

     
     
191852
                           gb|AAG05996.1|AE004689_8
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           111
                           99.09
                           99.09
                           0
                           567.0
     

     
     
191853
                           gb|AAO56819.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           111
                           69.36
                           79.27
                           0
                           399.0
     

     
     
191854
                           gb|AAN69590.1|AE016592_9
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           111
                           67.56
                           78.37
                           0
                           397.0
     

     
     
191855
                           emb|CAE14079.1|
                           (BX571865) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           111
                           50.45
                           64.86
                           0
                           300.0
     

     






      

          
GC ORFID: 48013How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2608Glimmer Score: 

          
Start: 2321650Stop: 2321985

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2608 translation of PA2608Homolog Bit Score 223.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2745 (ORF: BLASTX 154.0), t_PA2608 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCTCCTTACGCTGGAAGGCCGGGAAATCCGGCTGGACAAGGACGGCTACCTCGCCGCCCTCGACGAT 
TGGTCGGAGCCGGTGGCGGAAGCCCTGGCCGCCCGCGAGGAGCTGGCCCTGACCGCCGAGCACTGGGAGATT 
CTCCAACTGCTCCGCGAGTTCTATGCGGAGTTCCAGCTGTCTCCGGCCAACCGCCCGCTGATCAAGTACGTC 
GCCCAGCGACTGGGTCCGGACAAGGGCAACAGCCTGCACCTCAACCACCTGTTCAAGGGCGCCCCGGCCAAG 
CTTGGCGCGAAGCTGGCCGGCCTGCCGAAACCGAGCAACTGTCTATGA