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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03897.1|AE004488_1 (AE004488) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/592 (99%), Positives = 592/592 (100%)
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Sequence:
ATGGCTGATTACAAAGCTCCGCTGCGCGACATGCGCTTCGTCCTCAATGAGGTGTTCGAGGTCTCCCGGCTC
TGGGCGCAACTGCCGGCGCTGGCCGAAGTGGTCGACGCCGAGACCGCCGCGGCGATCCTCGAAGAGGCCGGC
AAGGTCACCGCCGGTACCATCGCCCCGCTGAACCGTCCGGGCGACGAGGAAGGCTGCCAGTGGAACGCTGGC
GCGGTGAGCACCCCGGCCGGCTTCCCCGAGGCCTACCGGACCTACGCCGAAGGCGGCTGGGTCGGCGTCGGC
GGTGATCCGGCCTACGGCGGCATGGGTATGCCCAAGGTGATCTCGGCGCAGGTCGAGGAACTGGTCAACTCG
GCCAACCTGTCGTTCGGCCTGTATCCGATGCTGACCGCCGGCGCCTGCCTGGCGCTCAATGCCCATGCCAGC
GACGAACTGAAGGACAAGTACCTGCCGAACATGTACGCCGGTATCTGGGCCGGTTCCATGTGCCTGACCGAG
CCGCATGCCGGCACCGACCTGGGTATCATCCGCACCAAGGCTGAGCCGCAGGCCGACGGCTCCTACAAGATC
AGCGGGACCAAGATCTTCATCACCGGCGGCGAGCATGACCTGACCGAGAACATCATCCACCTGGTGCTGGCC
AAGCTGCCCGACGCCCCGGCCGGGCCGAAGGGCATCTCGCTGTTCCTGGTGCCGAAGGTGCTGGTCAACGCC
GACGGCTCGCTGGGCGAGAAGAACAGCCTGGGTTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG
GCCACCTGCGTGATGAACTTCGACGGCGCCACCGGTTGGCTGGTGGGCGAGGTCAACAAGGGCCTGGCGGCG
ATGTTCACCATGATGAACTACGAGCGCCTTGGCGTCGGCATCCAGGGCCTGGCCACCGGCGAGCGCTCCTAC
CAGAGCGCCATCGAGTATGCCCGCGAGCGTATCCAGAGCCGCGCGCCGACCGGCCCGGTAGCCAAGGACAAG
GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGAACGAAGGC
GGCCGCGCCTTCTCCAGCTACGTCGCGATGCAGCTGGACACCGCCAAGTACAGCGAAGACGCGGTCACCCGC
AAGCGTGCGGAAGAGCTGGTGGCGCTGCTGACCCCGGTGGCCAAGGCATTCCTCACCGACATGGGACTGGAA
ACCACTATCCATGGCCAGCAGATCTTCGGCGGCCACGGCTTCATCCGCGAATGGGGCCAGGAGCAACTGGTG
CGCGACTGTCGCATCACGCAGATCTACGAAGGCACCAACGGCATTCAGGCGCTCGACTTGGTGGGACGTAAG
GTGATCGGCAGCGGCGGCGCCTTCTCCCGTCACTTCACCGACGAGATCAAGGCCTTCGTCGCTTCCGCCGAC
GAGGCCCTGGGCGAGTTCAGCAAGCCGCTGGCGGCCGCCGTGGAGAACCTGGAAGAGCTGACCGCCTGGCTG
CTCGACCGCGCCAAGGGCAACCCCAACGAGATCGGCGCGGCGTCGGTCGAATACCTGCATGTGTTCGGCTAC
ACCGCCTATGCCTACATGTGGGCATTGATGGCGCGCACCGCGCTGGCCAAGCAGGGCGAGGACGACTTCTAC
GCCAGCAAGCTGGGTACCGCGCGCTTCTACTTCGCCCGCCTGCTGCCGCGCATCCATTCCCTGAGCGCCTCC
GTGCGCGCCGGCAGCGAGTCGCTGTACCTGCTGGACGCCGAGCAGTTCTGA |
Translation:
MADYKAPLRDMRFVLNEVFEVSRLWAQLPALAEVVDAETAAAILEEAGKVTAGTIAPLNRPGDEEGCQWNAG
AVSTPAGFPEAYRTYAEGGWVGVGGDPAYGGMGMPKVISAQVEELVNSANLSFGLYPMLTAGACLALNAHAS
DELKDKYLPNMYAGIWAGSMCLTEPHAGTDLGIIRTKAEPQADGSYKISGTKIFITGGEHDLTENIIHLVLA
KLPDAPAGPKGISLFLVPKVLVNADGSLGEKNSLGCGSIEHKMGIKASATCVMNFDGATGWLVGEVNKGLAA
MFTMMNYERLGVGIQGLATGERSYQSAIEYARERIQSRAPTGPVAKDKAADPIIVHPDVRRMLLTMKALNEG
GRAFSSYVAMQLDTAKYSEDAVTRKRAEELVALLTPVAKAFLTDMGLETTIHGQQIFGGHGFIREWGQEQLV
RDCRITQIYEGTNGIQALDLVGRKVIGSGGAFSRHFTDEIKAFVASADEALGEFSKPLAAAVENLEELTAWL
LDRAKGNPNEIGAASVEYLHVFGYTAYAYMWALMARTALAKQGEDDFYASKLGTARFYFARLLPRIHSLSAS
VRAGSESLYLLDAEQF* |
AnnotationID:510 | GeneID:501 |
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Modification Date/Time: |
2005-03-28 05:05:21 |
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GeneProduct: | putative acyl-CoA dehydrogenase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (13) Fatty acid and phospholipid metabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN66001.1|AE016229_2 (AE016775) acyl-CoA dehydrogenase family protein [Pseudomonas
putida KT2440]
Length = 592
Score = 983 bits (2540), Expect = 0.0
Identities = 480/592 (81%), Positives = 532/592 (89%)
>gb|AAO54049.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 592
Score = 969 bits (2505), Expect = 0.0
Identities = 465/592 (78%), Positives = 534/592 (90%)
>emb|CAD14001.1| (AL646059) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
[Ralstonia solanacearum]
Length = 595
Score = 655 bits (1690), Expect = 0.0
Identities = 333/596 (55%), Positives = 428/596 (71%), Gaps = 5/596 (0%)
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Structural Features: | cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues, 99.8% aligned
Score = 444 bits (1144), Expect = 1e-125
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues, 99.5% aligned
Score = 185 bits (470), Expect = 2e-47
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues, 97.9% aligned
Score = 178 bits (453), Expect = 1e-45 |
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GC ORFID: 43503 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA0508 | Glimmer Score: |
Start: 6380319 | Stop: 6382097 |
Length: 1779 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA0508 translation of PA0508 | Homolog Bit Score 1177.0 |
Other Homologs: psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 969.0), t_PA4199 (ORF: BLASTX 880.0), t_PA0507 (ORF: BLASTX 680.0), t_PA0506 (ORF: BLASTX 620.0), t_PA5187 (ORF: BLASTX 610.0), t_PA1284 (ORF: BLASTX 520.0), t_PA5020 (ORF: BLASTX 384.0), t_PA0508 (ORF: GLIMMER) |
GC ORF Sequence |
ATGGCTGATTACAAAGCTCCGCTGCGCGACATGCGCTTCGTCCTCAATGAGGTGTTCGAGGTCTCCCGGCTC TGGGCGCAACTGCCGGCGCTGGCCGAAGTGGTCGACGCCGAGACCGCCGCGGCGATCCTCGAAGAGGCCGGC AAGGTCACCGCCGGTACCATCGCCCCGCTGAACCGTCCGGGCGACGAGGAAGGCTGCCAGTGGAACGCTGGC GCGGTGAGCACCCCGGCCGGCTTCCCCGAGGCCTACCGGACCTACGCCGAAGGCGGCTGGGTCGGCGTCGGC GGTGATCCGGCCTACGGCGGCATGGGTATGCCCAAGGTGATCTCGGCGCAGGTCGAGGAACTGGTCAACTCG GCCAACCTGTCGTTCGGCCTGTATCCGATGCTGACCGCCGGCGCCTGCCTGGCGCTCAATGCCCATGCCAGC GACGAACTGAAGGACAAGTACCTGCCGAACATGTACGCCGGTATCTGGGCCGGTTCCATGTGCCTGACCGAG CCGCATGCCGGCACCGACCTGGGTATCATCCGCACCAAGGCTGAGCCGCAGGCCGACGGCTCCTACAAGATC AGCGGGACCAAGATCTTCATCACCGGCGGCGAGCATGACCTGACCGAGAACATCATCCACCTGGTGCTGGCC AAGCTGCCCGACGCCCCGGCCGGGCCGAAGGGCATCTCGCTGTTCCTGGTGCCGAAGGTGCTGGTCAACGCC GACGGCTCGCTGGGCGAGAAGAACAGCCTGGGTTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG GCCACCTGCGTGATGAACTTCGACGGCGCCACCGGTTGGCTGGTGGGCGAGGTCAACAAGGGCCTGGCGGCG ATGTTCACCATGATGAACTACGAGCGCCTTGGCGTCGGCATCCAGGGCCTGGCCACCGGCGAGCGCTCCTAC CAGAGCGCCATCGAGTATGCCCGCGAGCGTATCCAGAGCCGCGCGCCGACCGGCCCGGTAGCCAAGGACAAG GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGAACGAAGGC GGCCGCGCCTTCTCCAGCTACGTCGCGATGCAGCTGGACACCGCCAAGTACAGCGAAGACGCGGTCACCCGC AAGCGTGCGGAAGAGCTGGTGGCGCTGCTGACCCCGGTGGCCAAGGCATTCCTCACCGACATGGGACTGGAA ACCACTATCCATGGCCAGCAGATCTTCGGCGGCCACGGCTTCATCCGCGAATGGGGCCAGGAGCAACTGGTG CGCGACTGTCGCATCACGCAGATCTACGAAGGCACCAACGGCATTCAGGCGCTCGACTTGGTGGGACGTAAG GTGATCGGCAGCGGCGGCGCCTTCTCCCGTCACTTCACCGACGAGATCAAGGCCTTCGTCGCTTCCGCCGAC GAGGCCCTGGGCGAGTTCAGCAAGCCGCTGGCGGCCGCCGTGGAGAACCTGGAAGAGCTGACCGCCTGGCTG CTCGACCGCGCCAAGGGCAACCCCAACGAGATCGGCGCGGCGTCGGTCGAATACCTGCATGTGTTCGGCTAC ACCGCCTATGCCTACATGTGGGCATTGATGGCGCGCACCGCGCTGGCCAAGCAGGGCGAGGACGACTTCTAC GCCAGCAAGCTGGGTACCGCGCGCTTCTACTTCGCCCGCCTGCTGCCGCGCATCCATTCCCTGAGCGCCTCC GTGCGCGCCGGCAGCGAGTCGCTGTACCTGCTGGACGCCGAGCAGTTCTGA |
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