ViewGene

Locus Name:
GeneID:
Location:

GeneID:501
TrivialName: PA14_06640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06640
PAO1 Ortholog Locus:PA0508
Sequence Length:1779
Protein Length:592
Start: 578977
Stop: 580755
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03897.1|AE004488_1 (AE004488) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/592 (99%), Positives = 592/592 (100%)
Sequence:
ATGGCTGATTACAAAGCTCCGCTGCGCGACATGCGCTTCGTCCTCAATGAGGTGTTCGAGGTCTCCCGGCTC
TGGGCGCAACTGCCGGCGCTGGCCGAAGTGGTCGACGCCGAGACCGCCGCGGCGATCCTCGAAGAGGCCGGC
AAGGTCACCGCCGGTACCATCGCCCCGCTGAACCGTCCGGGCGACGAGGAAGGCTGCCAGTGGAACGCTGGC
GCGGTGAGCACCCCGGCCGGCTTCCCCGAGGCCTACCGGACCTACGCCGAAGGCGGCTGGGTCGGCGTCGGC
GGTGATCCGGCCTACGGCGGCATGGGTATGCCCAAGGTGATCTCGGCGCAGGTCGAGGAACTGGTCAACTCG
GCCAACCTGTCGTTCGGCCTGTATCCGATGCTGACCGCCGGCGCCTGCCTGGCGCTCAATGCCCATGCCAGC
GACGAACTGAAGGACAAGTACCTGCCGAACATGTACGCCGGTATCTGGGCCGGTTCCATGTGCCTGACCGAG
CCGCATGCCGGCACCGACCTGGGTATCATCCGCACCAAGGCTGAGCCGCAGGCCGACGGCTCCTACAAGATC
AGCGGGACCAAGATCTTCATCACCGGCGGCGAGCATGACCTGACCGAGAACATCATCCACCTGGTGCTGGCC
AAGCTGCCCGACGCCCCGGCCGGGCCGAAGGGCATCTCGCTGTTCCTGGTGCCGAAGGTGCTGGTCAACGCC
GACGGCTCGCTGGGCGAGAAGAACAGCCTGGGTTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG
GCCACCTGCGTGATGAACTTCGACGGCGCCACCGGTTGGCTGGTGGGCGAGGTCAACAAGGGCCTGGCGGCG
ATGTTCACCATGATGAACTACGAGCGCCTTGGCGTCGGCATCCAGGGCCTGGCCACCGGCGAGCGCTCCTAC
CAGAGCGCCATCGAGTATGCCCGCGAGCGTATCCAGAGCCGCGCGCCGACCGGCCCGGTAGCCAAGGACAAG
GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGAACGAAGGC
GGCCGCGCCTTCTCCAGCTACGTCGCGATGCAGCTGGACACCGCCAAGTACAGCGAAGACGCGGTCACCCGC
AAGCGTGCGGAAGAGCTGGTGGCGCTGCTGACCCCGGTGGCCAAGGCATTCCTCACCGACATGGGACTGGAA
ACCACTATCCATGGCCAGCAGATCTTCGGCGGCCACGGCTTCATCCGCGAATGGGGCCAGGAGCAACTGGTG
CGCGACTGTCGCATCACGCAGATCTACGAAGGCACCAACGGCATTCAGGCGCTCGACTTGGTGGGACGTAAG
GTGATCGGCAGCGGCGGCGCCTTCTCCCGTCACTTCACCGACGAGATCAAGGCCTTCGTCGCTTCCGCCGAC
GAGGCCCTGGGCGAGTTCAGCAAGCCGCTGGCGGCCGCCGTGGAGAACCTGGAAGAGCTGACCGCCTGGCTG
CTCGACCGCGCCAAGGGCAACCCCAACGAGATCGGCGCGGCGTCGGTCGAATACCTGCATGTGTTCGGCTAC
ACCGCCTATGCCTACATGTGGGCATTGATGGCGCGCACCGCGCTGGCCAAGCAGGGCGAGGACGACTTCTAC
GCCAGCAAGCTGGGTACCGCGCGCTTCTACTTCGCCCGCCTGCTGCCGCGCATCCATTCCCTGAGCGCCTCC
GTGCGCGCCGGCAGCGAGTCGCTGTACCTGCTGGACGCCGAGCAGTTCTGA
Translation:
MADYKAPLRDMRFVLNEVFEVSRLWAQLPALAEVVDAETAAAILEEAGKVTAGTIAPLNRPGDEEGCQWNAG
AVSTPAGFPEAYRTYAEGGWVGVGGDPAYGGMGMPKVISAQVEELVNSANLSFGLYPMLTAGACLALNAHAS
DELKDKYLPNMYAGIWAGSMCLTEPHAGTDLGIIRTKAEPQADGSYKISGTKIFITGGEHDLTENIIHLVLA
KLPDAPAGPKGISLFLVPKVLVNADGSLGEKNSLGCGSIEHKMGIKASATCVMNFDGATGWLVGEVNKGLAA
MFTMMNYERLGVGIQGLATGERSYQSAIEYARERIQSRAPTGPVAKDKAADPIIVHPDVRRMLLTMKALNEG
GRAFSSYVAMQLDTAKYSEDAVTRKRAEELVALLTPVAKAFLTDMGLETTIHGQQIFGGHGFIREWGQEQLV
RDCRITQIYEGTNGIQALDLVGRKVIGSGGAFSRHFTDEIKAFVASADEALGEFSKPLAAAVENLEELTAWL
LDRAKGNPNEIGAASVEYLHVFGYTAYAYMWALMARTALAKQGEDDFYASKLGTARFYFARLLPRIHSLSAS
VRAGSESLYLLDAEQF*
AnnotationID:510GeneID:501
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 05:05:21
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA0508
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153,cd00567,cd01158
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66001.1|AE016229_2 (AE016775) acyl-CoA dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 592

 Score =  983 bits (2540), Expect = 0.0
 Identities = 480/592 (81%), Positives = 532/592 (89%)

>gb|AAO54049.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 592

 Score =  969 bits (2505), Expect = 0.0
 Identities = 465/592 (78%), Positives = 534/592 (90%)

>emb|CAD14001.1| (AL646059) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 595

 Score =  655 bits (1690), Expect = 0.0
 Identities = 333/596 (55%), Positives = 428/596 (71%), Gaps = 5/596 (0%)

Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues,  99.8% aligned
Score =  444 bits (1144), Expect = 1e-125 

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  99.5% aligned
Score =  185 bits (470), Expect = 2e-47

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD). 
CD-Length = 373 residues,  97.9% aligned
Score =  178 bits (453), Expect = 1e-45
Genomic Context:
Comment:
ReferenceID:1005
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18147
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33816
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:501_cdd.html
URL:
Homologs By Global Alignment
Gene ID:501

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
874 PA0508_tr translation of PA0508 592 99.83 99.99 0 3046.0
36360 gb|AAG03897.1|AE004488_1 (AE004488) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 592 99.83 99.99 0 3046.0
36361 gb|AAN66001.1|AE016229_2 (AE016775) acyl-CoA dehydrogenase family protein [Pseudomonas putida KT2440] 592 81.08 89.86 0 2540.0
36362 gb|AAO54049.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000] 592 78.54 90.20 0 2505.0
875 PA4199_tr translation of PA4199 594 73.56 84.17 3 2276.0
GC ORFID: 43503How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0508Glimmer Score:
Start: 6380319Stop: 6382097
Length: 1779
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0508 translation of PA0508Homolog Bit Score 1177.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 969.0), t_PA4199 (ORF: BLASTX 880.0), t_PA0507 (ORF: BLASTX 680.0), t_PA0506 (ORF: BLASTX 620.0), t_PA5187 (ORF: BLASTX 610.0), t_PA1284 (ORF: BLASTX 520.0), t_PA5020 (ORF: BLASTX 384.0), t_PA0508 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGATTACAAAGCTCCGCTGCGCGACATGCGCTTCGTCCTCAATGAGGTGTTCGAGGTCTCCCGGCTC
TGGGCGCAACTGCCGGCGCTGGCCGAAGTGGTCGACGCCGAGACCGCCGCGGCGATCCTCGAAGAGGCCGGC
AAGGTCACCGCCGGTACCATCGCCCCGCTGAACCGTCCGGGCGACGAGGAAGGCTGCCAGTGGAACGCTGGC
GCGGTGAGCACCCCGGCCGGCTTCCCCGAGGCCTACCGGACCTACGCCGAAGGCGGCTGGGTCGGCGTCGGC
GGTGATCCGGCCTACGGCGGCATGGGTATGCCCAAGGTGATCTCGGCGCAGGTCGAGGAACTGGTCAACTCG
GCCAACCTGTCGTTCGGCCTGTATCCGATGCTGACCGCCGGCGCCTGCCTGGCGCTCAATGCCCATGCCAGC
GACGAACTGAAGGACAAGTACCTGCCGAACATGTACGCCGGTATCTGGGCCGGTTCCATGTGCCTGACCGAG
CCGCATGCCGGCACCGACCTGGGTATCATCCGCACCAAGGCTGAGCCGCAGGCCGACGGCTCCTACAAGATC
AGCGGGACCAAGATCTTCATCACCGGCGGCGAGCATGACCTGACCGAGAACATCATCCACCTGGTGCTGGCC
AAGCTGCCCGACGCCCCGGCCGGGCCGAAGGGCATCTCGCTGTTCCTGGTGCCGAAGGTGCTGGTCAACGCC
GACGGCTCGCTGGGCGAGAAGAACAGCCTGGGTTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG
GCCACCTGCGTGATGAACTTCGACGGCGCCACCGGTTGGCTGGTGGGCGAGGTCAACAAGGGCCTGGCGGCG
ATGTTCACCATGATGAACTACGAGCGCCTTGGCGTCGGCATCCAGGGCCTGGCCACCGGCGAGCGCTCCTAC
CAGAGCGCCATCGAGTATGCCCGCGAGCGTATCCAGAGCCGCGCGCCGACCGGCCCGGTAGCCAAGGACAAG
GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGAACGAAGGC
GGCCGCGCCTTCTCCAGCTACGTCGCGATGCAGCTGGACACCGCCAAGTACAGCGAAGACGCGGTCACCCGC
AAGCGTGCGGAAGAGCTGGTGGCGCTGCTGACCCCGGTGGCCAAGGCATTCCTCACCGACATGGGACTGGAA
ACCACTATCCATGGCCAGCAGATCTTCGGCGGCCACGGCTTCATCCGCGAATGGGGCCAGGAGCAACTGGTG
CGCGACTGTCGCATCACGCAGATCTACGAAGGCACCAACGGCATTCAGGCGCTCGACTTGGTGGGACGTAAG
GTGATCGGCAGCGGCGGCGCCTTCTCCCGTCACTTCACCGACGAGATCAAGGCCTTCGTCGCTTCCGCCGAC
GAGGCCCTGGGCGAGTTCAGCAAGCCGCTGGCGGCCGCCGTGGAGAACCTGGAAGAGCTGACCGCCTGGCTG
CTCGACCGCGCCAAGGGCAACCCCAACGAGATCGGCGCGGCGTCGGTCGAATACCTGCATGTGTTCGGCTAC
ACCGCCTATGCCTACATGTGGGCATTGATGGCGCGCACCGCGCTGGCCAAGCAGGGCGAGGACGACTTCTAC
GCCAGCAAGCTGGGTACCGCGCGCTTCTACTTCGCCCGCCTGCTGCCGCGCATCCATTCCCTGAGCGCCTCC
GTGCGCGCCGGCAGCGAGTCGCTGTACCTGCTGGACGCCGAGCAGTTCTGA