ViewGene
Locus Name:
GeneID:
Location:

GeneID:5009
TrivialName: PA14_05910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05910
PAO1 Ortholog Locus:
Sequence Length:732
Protein Length:243
Start: 523139
Stop: 523870
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN70522.1|AE016694_5 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 140/241 (58%), Positives = 171/241 (70%), Gaps = 1/241 (0%)
Sequence:
ATGCTGCGATGCGCACTCCTGCTGCTGACATTGCTCCTCCCTTGCGCGCTGCCTGCCGCCAACCTGCGCCTG
GTCGGCGACTCCTGGCCGCCTTTCGTCGATTCGCGCCTGCCTGGCAACGGCCTGGCGGTGGAACTGGTGACC
ACCGCGCTCAAGCGCGCCGGCTTCGACTCGAGCTTCCAGCAGGTACCCTGGTCGCGTGCCCTGCACGGCGTG
CGCAGCGGTGACTACGACATCGCCCTGAGCGCCTGGTACGAGCCCGCCCGCAGCCTCTACGGGCAGTTTTCC
CGCGCCTACCTGAGCAACCGCATTCGCCTGCTGCAACGCAAGGGGCGGGGTATCGAGTTTTCCCGCCTGAGC
GACCTGCGTCCCTACCGCATCGCGGTCGTGCGCGACTATGCCTACGCGCCCGAATTCGACCGTGACAGCCGT
CTGCAGAAGGTCAACGTGACCAGCTTCGCCAACGCCGCGCGGATGCTCGAGGCGGGGCGGGTCGACCTGGCG
GTGGAGGACGAGCTGGCGCTGGGGGTCGCCTTCAAGGGCGAACTGGCCGATTTGCGCGACAAGCTGGAGGTA
CTGCCCACCCCGCTTGGCGAGAACGGCCTGCACCTGCTGGTGAGCCTGAGGAATCCCCGGCATGACGAGATC
GTCGAAGGCTTCGACCTGGCCATCCGCGGAATGCGCGACGACGGCAGCTACCAGCGCCTGCTGGAGCGCTAC
GGCGCGCGCTAA
Translation:
MLRCALLLLTLLLPCALPAANLRLVGDSWPPFVDSRLPGNGLAVELVTTALKRAGFDSSFQQVPWSRALHGV
RSGDYDIALSAWYEPARSLYGQFSRAYLSNRIRLLQRKGRGIEFSRLSDLRPYRIAVVRDYAYAPEFDRDSR
LQKVNVTSFANAARMLEAGRVDLAVEDELALGVAFKGELADLRDKLEVLPTPLGENGLHLLVSLRNPRHDEI
VEGFDLAIRGMRDDGSYQRLLERYGAR*
AnnotationID:5014GeneID:5009
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 19:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative bacterial periplasmic transport system
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00134
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84324332|ref|ZP_00972391.1|  COG0834: ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain [Pseudomonas aeruginosa 
2192]
 gi|84318775|ref|ZP_00967195.1|  COG0834: ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain [Pseudomonas aeruginosa 
C3719]
Length=243

 Score =  433 bits (1113),  Expect = 3e-120
 Identities = 217/219 (99%), Positives = 219/219 (100%), Gaps = 0/219 (0%)

gi|94415709|ref|ZP_01295545.1|  hypothetical protein PaerP_01002486 [Pseudomonas aeruginosa PA7]
Length=243

 Score =  412 bits (1059),  Expect = 6e-114
 Identities = 205/219 (93%), Positives = 214/219 (97%), Gaps = 0/219 (0%)






 
Structural Features:
cd00134, PBPb, Bacterial periplasmic transport systems
CD-Length = 218 residues,  98.2% aligned
Score = 91.6 bits (227), Expect = 7e-20
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 11/221 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10018




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33753




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5009_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5009
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
191816
                           gb|AAN70522.1|AE016694_5
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           246
                           56.91
                           69.51
                           4
                           698.0
     

     
     
191817
                           gb|AAO58438.1|
                           (AE016874) amino acid ABC transporter, periplasmic amino acid-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           46.21
                           60.55
                           8
                           554.0
     

     






      

          
GC ORFID: 48011How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3373Glimmer Score: 

          
Start: 6324481Stop: 6325212

          
Length: 732


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3373 related to: gi|15601731|ref|NP_233362.1| (NC_002506) amino acid ABC transporter, periplasmic amino acid-binding protein, putative [Vibrio cholerae] pir||C82393 probable amino acid ABC transporter, periplasmic aminoHomolog Bit Score 224.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3373 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGATGCGCACTCCTGCTGCTGACATTGCTCCTCCCTTGCGCGCTGCCTGCCGCCAACCTGCGCCTG 
GTCGGCGACTCCTGGCCGCCTTTCGTCGATTCGCGCCTGCCTGGCAACGGCCTGGCGGTGGAACTGGTGACC 
ACCGCGCTCAAGCGCGCCGGCTTCGACTCGAGCTTCCAGCAGGTACCCTGGTCGCGTGCCCTGCACGGCGTG 
CGCAGCGGTGACTACGACATCGCCCTGAGCGCCTGGTACGAGCCCGCCCGCAGCCTCTACGGGCAGTTTTCC 
CGCGCCTACCTGAGCAACCGCATTCGCCTGCTGCAACGCAAGGGGCGGGGTATCGAGTTTTCCCGCCTGAGC 
GACCTGCGTCCCTACCGCATCGCGGTCGTGCGCGACTATGCCTACGCGCCCGAATTCGACCGTGACAGCCGT 
CTGCAGAAGGTCAACGTGACCAGCTTCGCCAACGCCGCGCGGATGCTCGAGGCGGGGCGGGTCGACCTGGCG 
GTGGAGGACGAGCTGGCGCTGGGGGTCGCCTTCAAGGGCGAACTGGCCGATTTGCGCGACAAGCTGGAGGTA 
CTGCCCACCCCGCTTGGCGAGAACGGCCTGCACCTGCTGGTGAGCCTGAGGAATCCCCGGCATGACGAGATC 
GTCGAAGGCTTCGACCTGGCCATCCGCGGAATGCGCGACGACGGCAGCTACCAGCGCCTGCTGGAGCGCTAC 
GGCGCGCGCTAA