ViewGene
Locus Name:
GeneID:
Location:

GeneID:5007
TrivialName: PA14_69200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69200
PAO1 Ortholog Locus:PA5240
Sequence Length:327
Protein Length:108
Start: 6172908
Stop: 6172582
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08625.1|AE004936_8 (AE004936) thioredoxin [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGAGCGAACATATCGTCAACGTTACTGATGCCAGCTTCGAGCAGGACGTGCTGAAGGCCGACGGCCCTGTG
CTGGTGGACTACTGGGCCGAGTGGTGCGGTCCGTGCAAGATGATCGCGCCGGTGCTGGACGAAGTCGCCAGG
GACTATCAGGGCAAGCTGAAGGTCTGCAAGCTGAACATCGACGAGAACCAGGACACTCCGCCGAAGTACGGC
GTGCGTGGCATCCCTACCCTGATGCTGTTCAAGGACGGCAATGTCGAGGCGACCAAGGTCGGCGCACTGTCC
AAGTCGCAGCTGGCGGCCTTCCTCGACGCCAATATCTGA
Translation:
MSEHIVNVTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYG
VRGIPTLMLFKDGNVEATKVGALSKSQLAAFLDANI*
AnnotationID:5012GeneID:5007
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:10
Gene Name:trxA
Confidence Code:2
GeneProduct:thioredoxin
Cell Localization:()
Synonyms:trx
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00085
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58669.1| (AE016875) thioredoxin [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 109

 Score =  183 bits (465), Expect = 1e-46
 Identities = 89/104 (85%), Positives = 95/104 (91%)

>gb|AAN70780.1|AE016722_1 (AE016793) thioredoxin [Pseudomonas putida KT2440]
          Length = 109

 Score =  181 bits (458), Expect = 9e-46
 Identities = 87/107 (81%), Positives = 98/107 (91%)

>emb|CAD84945.1| (BX321859) Thioredoxin [Nitrosomonas europaea ATCC 19718]
          Length = 108

 Score =  172 bits (435), Expect = 4e-43
 Identities = 78/108 (72%), Positives = 95/108 (87%)






 
Structural Features:
pfam00085, Thioredoxin
CD-Length = 108 residues,  99.1% aligned
Score =  126 bits (318), Expect = 6e-31
Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 2/108 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10014




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27155




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34856




  
Author/Investigator(s):
        





  
Title:
        CD




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5007_cdd.html


    		




 
URL:

















    ReferenceID:35747




  
Author/Investigator(s):
        Lim CJ, Geraghty D, Fuchs JA.





  
Title:
        Cloning and nucleotide sequence of the trxA gene of Escherichia coli K-12.




  
PubMed:
        3891733


MedLine:
        




    
Source:
J Bacteriol. 1985 Jul;163(1):311-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3891733

















    ReferenceID:35748




  
Author/Investigator(s):
        Lubbers M, Andreesen JR.





  
Title:
        Components of glycine reductase from Eubacterium acidaminophilum. Cloning, sequencing and identification of the genes for thioredoxin reductase, thioredoxin and selenoprotein PA.




  
PubMed:
        8223622


MedLine:
        




    
Source:
Eur J Biochem. 1993 Oct 15;217(2):791-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8223622









           
Homologs By Global Alignment 

           

       



     
Gene ID:5007
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7413
                           PA5240_tr
                           translation of PA5240
                           108
                           99.99
                           99.99
                           0
                           570.0
     

     
     
191681
                           gb|AAG08625.1|AE004936_8
                           (AE004936) thioredoxin [Pseudomonas aeruginosa PAO1]
                           108
                           99.99
                           99.99
                           0
                           570.0
     

     
     
191682
                           gb|AAD29108.2|AF053463_2
                           (AF053463) thioredoxin [Pseudomonas aeruginosa]
                           108
                           99.99
                           99.99
                           0
                           570.0
     

     
     
191683
                           gb|AAO58669.1|
                           (AE016875) thioredoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           109
                           82.56
                           89.90
                           1
                           466.0
     

     
     
191684
                           gb|AAN70780.1|AE016722_1
                           (AE016793) thioredoxin [Pseudomonas putida KT2440]
                           109
                           79.81
                           89.90
                           1
                           457.0
     

     






      

          
GC ORFID: 48009How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5240Glimmer Score: 

          
Start: 5436595Stop: 5436269

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5240 translation of PA5240Homolog Bit Score 224.0

          
Other Homologs:  t_PA5240 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACATATCGTCAACGTTACTGATGCCAGCTTCGAGCAGGACGTGCTGAAGGCCGACGGCCCTGTG 
CTGGTGGACTACTGGGCCGAGTGGTGCGGTCCGTGCAAGATGATCGCGCCGGTGCTGGACGAAGTCGCCAGG 
GACTATCAGGGCAAGCTGAAGGTCTGCAAGCTGAACATCGACGAGAACCAGGACACTCCGCCGAAGTACGGC 
GTGCGTGGCATCCCTACCCTGATGCTGTTCAAGGACGGCAATGTCGAGGCGACCAAGGTCGGCGCACTGTCC 
AAGTCGCAGCTGGCGGCCTTCCTCGACGCCAATATCTGA