ViewGene
Locus Name:
GeneID:
Location:

GeneID:5005
TrivialName: PA14_12360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12360
PAO1 Ortholog Locus:PA3979
Sequence Length:333
Protein Length:110
Start: 1065206
Stop: 1065538
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07366.1|AE004816_2 (AE004816) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/110 (100%), Positives = 110/110 (100%)
Sequence:
ATGAACAAGCGCGAAAACCCCATCTACAAGGTGATTTTCCTCAACCAGGGCCAGGTCTTCGAGATGTATGCC
AAGCAGATCTACCAGAGCGATCTGTGGGGCTTCCTGGAAATCGAGGAGTTCGTCTTCGGCGAGCGCACCCAG
GTGGTGGTGGACCCCAGCGAGGAGAAGCTCAAGGCGCAGTTCGAAGGCGTTCTGCGCAGCTTCGTGCCGATG
CACGCGATCGTCCGCATCGACGAGGTCGAGCGCCTGGGTACGCCGAAGATCAGCGAGGCCAAGGGCGCGGGC
AACGTCATGCCGTTCCCCATGCCGATGCCCGGCAAGAGCGACTGA
Translation:
MNKRENPIYKVIFLNQGQVFEMYAKQIYQSDLWGFLEIEEFVFGERTQVVVDPSEEKLKAQFEGVLRSFVPM
HAIVRIDEVERLGTPKISEAKGAGNVMPFPMPMPGKSD*
AnnotationID:5010GeneID:5005
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 16:04:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3979
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4517
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAN70355.1|AE016677_6 (AE016792) conserved hypothetical protein
[Pseudomonas putida KT2440]
Length = 108
Score =  197 bits (501), Expect = 1e-50
Identities = 96/108 (88%), Positives = 103/108 (95%)






 
Structural Features:
gnl|CDD|13697 COG4517, COG4517, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 109
Score =  179 bits (454), Expect = 1e-46
Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 1/110 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10010




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5005
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7411
                           PA3979_tr
                           translation of PA3979
                           110
                           99.99
                           99.99
                           0
                           571.0
     

     
     
191524
                           gb|AAG07366.1|AE004816_2
                           (AE004816) hypothetical protein PA3979 [Pseudomonas aeruginosa PAO1]
                           110
                           99.99
                           99.99
                           0
                           571.0
     

     
     
191525
                           gb|AAO58232.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           110
                           87.27
                           91.81
                           2
                           506.0
     

     
     
191526
                           gb|AAN70355.1|AE016677_6
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           110
                           87.27
                           93.63
                           2
                           501.0
     

     
     
191527
                           gb|AAO90591.1|
                           (AE016963) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           113
                           44.24
                           66.37
                           4
                           255.0
     

     






      

          
GC ORFID: 48007How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3979Glimmer Score: 

          
Start: 3888732Stop: 3888400

          
Length: 333


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3979 translation of PA3979Homolog Bit Score 224.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5341 (ORF: BLASTX 201.0), t_PA3979 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGCGCGAAAACCCCATCTACAAGGTGATTTTCCTCAACCAGGGCCAGGTCTTCGAGATGTATGCC 
AAGCAGATCTACCAGAGCGATCTGTGGGGCTTCCTGGAAATCGAGGAGTTCGTCTTCGGCGAGCGCACCCAG 
GTGGTGGTGGACCCCAGCGAGGAGAAGCTCAAGGCGCAGTTCGAAGGCGTTCTGCGCAGCTTCGTGCCGATG 
CACGCGATCGTCCGCATCGACGAGGTCGAGCGCCTGGGTACGCCGAAGATCAGCGAGGCCAAGGGCGCGGGC 
AACGTCATGCCGTTCCCCATGCCGATGCCCGGCAAGAGCGACTGA