ViewGene
Locus Name:
GeneID:
Location:

GeneID:5003
TrivialName: PA14_28680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28680
PAO1 Ortholog Locus:PA2741
Sequence Length:357
Protein Length:118
Start: 2469972
Stop: 2470328
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06129.1|AE004702_6 (AE004702) 50S ribosomal protein L20 [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
ATGGCTCGTGTTAAGCGTGGCGTTATCGCCCGTCGTCGTCACAAGAAAATTCTGAAGCTCGCCAAGGGCTAC
TACGGTGCACGCTCGCGCGTGTTCCGCGTTGCCAAGCAGGCGGTGATCAAGGCTGGCCAATACGCCTACCGT
GACCGTCGTCAGCGCAAGCGTCAGTTCCGCGCACTGTGGATCGCCCGTATCAACGCTGGTGCTCGTCAGAAC
GGTCTGTCCTACAGCCGCCTGATCGCCGGCCTGAAAAAGGCGGCCATCGAGATCGACCGTAAGGTCCTGGCC
GATCTGGCAGTGAACGAAAAAGCGGCGTTTACCGCGATTGTCGAGAAAGCGAAGGCAAGCTTGGCTTAA
Translation:
MARVKRGVIARRRHKKILKLAKGYYGARSRVFRVAKQAVIKAGQYAYRDRRQRKRQFRALWIARINAGARQN
GLSYSRLIAGLKKAAIEIDRKVLADLAVNEKAAFTAIVEKAKASLA*
AnnotationID:5008GeneID:5003
AnnotatorUID: diggins
Modification Date/Time: 2004-12-08 07:07:36
Gene Name:rplT
Confidence Code:2
GeneProduct:50S ribosomal protein L20
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00453
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD34789.1|AF136400_3 (AF136400) ribosomal protein L20 [Pseudomonas fluorescens]
          Length = 118

 Score =  216 bits (550), Expect = 2e-56
 Identities = 112/118 (94%), Positives = 116/118 (98%)

>gb|AAL87033.1|AF332624_4 (AF332624) ribosomal protein L20 [Azotobacter vinelandii]
          Length = 118

 Score =  215 bits (548), Expect = 3e-56
 Identities = 113/118 (95%), Positives = 114/118 (96%)

>gb|AAN68080.1|AE016439_15 (AE016783) ribosomal protein L20 [Pseudomonas putida KT2440]
          Length = 118

 Score =  214 bits (546), Expect = 6e-56
 Identities = 112/118 (94%), Positives = 115/118 (97%)






 
Structural Features:
pfam00453, Ribosomal protein L20.






   
Genomic Context:






   
Comment:


















    ReferenceID:10006




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36291




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5003_cdd.html


    		




 
URL:

















    ReferenceID:36379




  
Author/Investigator(s):
        Fayat G, Mayaux JF, Sacerdot C, Fromant M, Springer M, Grunberg-Manago M, Blanquet S.





  
Title:
        Escherichia coli phenylalanyl-tRNA synthetase operon region. Evidence for an attenuation mechanism. Identification of the gene for the ribosomal protein L20.




  
PubMed:
        6317865


MedLine:
        




    
Source:
J Mol Biol. 1983 Dec 15;171(3):239-61.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6317865

















    ReferenceID:36380




  
Author/Investigator(s):
        Kolibachuk D, Rouhbakhsh D, Baumann P.





  
Title:
        Aromatic amino acid biosynthesis in Buchnera aphidicola (endosymbiont of aphids): cloning and sequencing of a DNA fragment containing aroH-thrS-infC-rpmI-rplT.




  
PubMed:
        7766160


MedLine:
        




    
Source:
Curr Microbiol. 1995 May;30(5):313-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7766160

















    ReferenceID:36384




  
Author/Investigator(s):
        Pon CL, Brombach M, Thamm S, Gualerzi CO.





  
Title:
        Cloning and characterization of a gene cluster from Bacillus stearothermophilus comprising infC, rpmI and rplT.




  
PubMed:
        2779520


MedLine:
        




    
Source:
Mol Gen Genet. 1989 Aug;218(2):355-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2779520









           
Homologs By Global Alignment 

           

       



     
Gene ID:5003
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7409
                           PA2741_tr
                           translation of PA2741
                           118
                           99.99
                           99.99
                           0
                           572.0
     

     
     
191369
                           gb|AAG06129.1|AE004702_6
                           (AE004702) 50S ribosomal protein L20 [Pseudomonas aeruginosa PAO1]
                           118
                           99.99
                           99.99
                           0
                           572.0
     

     
     
191371
                           gb|AAL87033.1|AF332624_4
                           (AF332624) ribosomal protein L20 [Azotobacter vinelandii]
                           118
                           95.76
                           96.61
                           0
                           548.0
     

     
     
191370
                           gb|AAD34789.1|AF136400_3
                           (AF136400) ribosomal protein L20 [Pseudomonas fluorescens]
                           118
                           94.91
                           98.30
                           0
                           550.0
     

     
     
191372
                           gb|AAN68080.1|AE016439_15
                           (AE016783) ribosomal protein L20 [Pseudomonas putida KT2440]
                           118
                           94.91
                           97.45
                           0
                           546.0
     

     






      

          
GC ORFID: 48005How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2741Glimmer Score: 

          
Start: 2483954Stop: 2483598

          
Length: 357


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2741 translation of PA2741Homolog Bit Score 224.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1166 (ORF: BLASTX 214.0), t_PA2741 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCGTGTTAAGCGTGGCGTTATCGCCCGTCGTCGTCACAAGAAAATTCTGAAGCTCGCCAAGGGCTAC 
TACGGTGCACGCTCGCGCGTGTTCCGCGTTGCCAAGCAGGCGGTGATCAAGGCTGGCCAATACGCCTACCGT 
GACCGTCGTCAGCGCAAGCGTCAGTTCCGCGCACTGTGGATCGCCCGTATCAACGCTGGTGCTCGTCAGAAC 
GGTCTGTCCTACAGCCGCCTGATCGCCGGCCTGAAAAAGGCGGCCATCGAGATCGACCGTAAGGTCCTGGCC 
GATCTGGCAGTGAACGAAAAAGCGGCGTTTACCGCGATTGTCGAGAAAGCGAAGGCAAGCTTGGCTTAA