ViewGene
Locus Name:
GeneID:
Location:

GeneID:5002
TrivialName: PA14_36460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36460
PAO1 Ortholog Locus:PA2175
Sequence Length:348
Protein Length:115
Start: 3246620
Stop: 3246967
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05563.1|AE004644_10 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/115 (98%), Positives = 114/115 (99%)
Sequence:
ATGTCCGGCCCCGATACCCTCAGCCAGGCCTTCGGCACCTTGCTGCTGGCCCTGGCCTTCAGCGCCTTCATC
GTTTTCGTTCGCGGCTACCGCCCGGGCGGGGTCAGCGGCGCCTGGTACGACCTGGTGCTCGCCTTCGTCGCG
GTATGGCTGGCGTTCTGGCCCGAAGCCGGCGTACTCGCACGCTCGCCGAGCCTGGCCAATGCCCTGGGGTTG
GTCTTGCAGGTCGGCGCTACCCTGCTCGGCTGCCTGCTCGGTTACGGGGTGGCAAGGGGATTGCGGCGGGCG
ATGCGGGAAACCCGGCAAAAAAGATCGGCTTCTTCGCCGGTGAATCGGCGAGGTTCGTAG
Translation:
MSGPDTLSQAFGTLLLALAFSAFIVFVRGYRPGGVSGAWYDLVLAFVAVWLAFWPEAGVLARSPSLANALGL
VLQVGATLLGCLLGYGVARGLRRAMRETRQKRSASSPVNRRGS*
AnnotationID:5007GeneID:5002
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2175
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10004




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5002
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7408
                           PA2175_tr
                           translation of PA2175
                           115
                           98.26
                           99.13
                           0
                           572.0
     

     
     
191368
                           gb|AAG05563.1|AE004644_10
                           (AE004644) hypothetical protein PA2175 [Pseudomonas aeruginosa PAO1]
                           115
                           98.26
                           99.13
                           0
                           572.0
     

     






      

          
GC ORFID: 48004How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2175Glimmer Score: 

          
Start: 1707295Stop: 1706948

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2175 translation of PA2175Homolog Bit Score 224.0

          
Other Homologs:  t_PA2175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGCCCCGATACCCTCAGCCAGGCCTTCGGCACCTTGCTGCTGGCCCTGGCCTTCAGCGCCTTCATC 
GTTTTCGTTCGCGGCTACCGCCCGGGCGGGGTCAGCGGCGCCTGGTACGACCTGGTGCTCGCCTTCGTCGCG 
GTATGGCTGGCGTTCTGGCCCGAAGCCGGCGTACTCGCACGCTCGCCGAGCCTGGCCAATGCCCTGGGGTTG 
GTCTTGCAGGTCGGCGCTACCCTGCTCGGCTGCCTGCTCGGTTACGGGGTGGCAAGGGGATTGCGGCGGGCG 
ATGCGGGAAACCCGGCAAAAAAGATCGGCTTCTTCGCCGGTGAATCGGCGAGGTTCGTAG