ViewGene
Locus Name:
GeneID:
Location:

GeneID:5001
TrivialName: PA14_51980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51980
PAO1 Ortholog Locus:PA0950
Sequence Length:354
Protein Length:117
Start: 4614009
Stop: 4614362
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04339.1|AE004529_5 (AE004529) probable arsenate reductase [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGAGCGAACTGATCCTGTTGCACAATCCGCGCTGCTCGAAATCCCGCGCAGCGCTCGAACTGCTCGAAGCC
CGCGGCCTGCAACCGCAAGTGGTGCGCTATCTGGAAACCCCGCCGAGCGCCGCCGAGCTGAAAGCGATCCTG
GCCAAGCTCGGCATTCCCGCCCGCCAGTTGCTGCGGACCGGGGAGGACGAATACAAGGCCCTCGGCCTGGAT
GAGCCCAGTCTTGGCGAAGAGGCCATCATCGAGGCAATGGCCAGGCATCCGAAGCTGATCGAGCGTCCGGTG
CTGGTCGCGGGTGATAAGGCGGTGGTTGGCCGGCCTCCGGAAAGAGTCCTGGAGATCCTCGTTTGA
Translation:
MSELILLHNPRCSKSRAALELLEARGLQPQVVRYLETPPSAAELKAILAKLGIPARQLLRTGEDEYKALGLD
EPSLGEEAIIEAMARHPKLIERPVLVAGDKAVVGRPPERVLEILV*
AnnotationID:5006GeneID:5001
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:probable arsenate reductase
Cell Localization:()
Synonyms:PA0950
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1393, pfam03960
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin family. Score: 126, 7e-31
pfam03960, ArsC, ArsC family. Score: 125, 1e-30






   
Genomic Context:






   
Comment:


















    ReferenceID:10002




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27143




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5001
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7407
                           PA0950_tr
                           translation of PA0950
                           117
                           99.14
                           99.14
                           0
                           572.0
     

     
     
191336
                           gb|AAG04339.1|AE004529_5
                           (AE004529) probable arsenate reductase [Pseudomonas aeruginosa PAO1]
                           117
                           99.14
                           99.14
                           0
                           572.0
     

     
     
191337
                           gb|AAN67266.1|AE016353_6
                           (AE016780) arsenate reductase [Pseudomonas putida KT2440]
                           117
                           74.35
                           85.47
                           0
                           443.0
     

     
     
191338
                           gb|AAO55207.1|
                           (AE016861) arsenate reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           117
                           66.66
                           81.19
                           0
                           415.0
     

     
     
191342
                           emb|CAC92312.1|
                           (AJ414155) putative arsenate reductase [Yersinia pestis CO92]
                           118
                           56.77
                           74.57
                           1
                           335.0
     

     






      

          
GC ORFID: 48003How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0950Glimmer Score: 

          
Start: 339898Stop: 339545

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0950 translation of PA0950Homolog Bit Score 224.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5935 (ORF: BLASTX 168.0), t_PA0950 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACTGATCCTGTTGCACAATCCGCGCTGCTCGAAATCCCGCGCAGCGCTCGAACTGCTCGAAGCC 
CGCGGCCTGCAACCGCAAGTGGTGCGCTATCTGGAAACCCCGCCGAGCGCCGCCGAGCTGAAAGCGATCCTG 
GCCAAGCTCGGCATTCCCGCCCGCCAGTTGCTGCGGACCGGGGAGGACGAATACAAGGCCCTCGGCCTGGAT 
GAGCCCAGTCTTGGCGAAGAGGCCATCATCGAGGCAATGGCCAGGCATCCGAAGCTGATCGAGCGTCCGGTG 
CTGGTCGCGGGTGATAAGGCGGTGGTTGGCCGGCCTCCGGAAAGAGTCCTGGAGATCCTCGTTTGA