ViewGene
Locus Name:
GeneID:
Location:

GeneID:5000
TrivialName: PA14_53630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53630
PAO1 Ortholog Locus:PA0825
Sequence Length:336
Protein Length:111
Start: 4757211
Stop: 4757546
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04214.1|AE004517_9 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 111/111 (100%), Positives = 111/111 (100%)
Sequence:
ATGTCACTACAGTCTGAAATGCTCGTGGAGCAGAAAGTTTCCAACGCCCAGAAATCCACCGGCACCGCCTAT
CTTCTGTGGTTCTTCCTGGGCGGTTTCGGCGCACACCGCTTCTACCTGGGGAAAACCGGCACGGCGGTTACC
CAACTGATCATCACGCTGATCGGTTGTTTCACCCTGTTCCCCCTGATCATTACCGGCATCTGGTGGATCGTC
GATGCCTTCCTGATTCCCGGCATCATCCAGGGCCATACGGAGCAGACCCGCCGCGACGCCCGGCTGGAAGTT
GCAGCGCTGCAGGTAGCCGGCGCTTCCGCGTCGCACCCTCAAGACTGA
Translation:
MSLQSEMLVEQKVSNAQKSTGTAYLLWFFLGGFGAHRFYLGKTGTAVTQLIITLIGCFTLFPLIITGIWWIV
DAFLIPGIIQGHTEQTRRDARLEVAALQVAGASASHPQD*
AnnotationID:5005GeneID:5000
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 14:02:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0825
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2314, XynA, Predicted membrane protein [Function unknown]
        CD-Length = 95 residues, 100.0% aligned
        Score = 60.4 bits (146), Expect = 6e-11






   
Genomic Context:






   
Comment:


















    ReferenceID:10000




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27141




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5000
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7406
                           PA0825_tr
                           translation of PA0825
                           111
                           99.99
                           99.99
                           0
                           572.0
     

     
     
191335
                           gb|AAG04214.1|AE004517_9
                           (AE004517) hypothetical protein PA0825 [Pseudomonas aeruginosa PAO1]
                           111
                           99.99
                           99.99
                           0
                           572.0
     

     






      

          
GC ORFID: 48002How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0825Glimmer Score: 

          
Start: 196696Stop: 196361

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0825 translation of PA0825Homolog Bit Score 224.0

          
Other Homologs:  t_PA0825 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCACTACAGTCTGAAATGCTCGTGGAGCAGAAAGTTTCCAACGCCCAGAAATCCACCGGCACCGCCTAT 
CTTCTGTGGTTCTTCCTGGGCGGTTTCGGCGCACACCGCTTCTACCTGGGGAAAACCGGCACGGCGGTTACC 
CAACTGATCATCACGCTGATCGGTTGTTTCACCCTGTTCCCCCTGATCATTACCGGCATCTGGTGGATCGTC 
GATGCCTTCCTGATTCCCGGCATCATCCAGGGCCATACGGAGCAGACCCGCCGCGACGCCCGGCTGGAAGTT 
GCAGCGCTGCAGGTAGCCGGCGCTTCCGCGTCGCACCCTCAAGACTGA