ViewGene
Locus Name:
GeneID:
Location:

GeneID:500
TrivialName: PA14_08240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08240
PAO1 Ortholog Locus:PA0636
Sequence Length:1836
Protein Length:611
Start: 703411
Stop: 705246
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04025.1|AE004499_4 (AE004499) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 608/611 (99%), Positives = 609/611 (99%)
Sequence:
ATGGCCACGAATACCGACGGCAGCCTGACGCTCGACCTGGTCCTTCGCAGCGAAGGGTACAGGGCCGGGATG
GACAAGGTTGGCAGGATCAACGATCAGAAAATGCGTGCCATGGAGGCGCGCGCGGAAAAGGCTGGCAAGGCT
ATCGGCAAAAGCCTGGACAGTTCGGCACTGATTGCCAGCAGCGTGCTGGACCAGGCGCTGGACATGCTGGGC
AGGACCAGTCGCCAGGCGGGTCAGGCCAAGAAGCCTGTGCAGAGCGCCCAGGACAAAGTACTGGCCGAGTGG
AAGACCCGGCAGAAGGAGCTGGGCGAAGCCTGGAAGAGCTATCGCGAACCACTCCAGGATCTGTCCAAGCTC
AACGAAGCACTACTGAAGAACTCTTCCGACAAGCTCGACAAGGCGCTGCTCAATCTCAGCGAGACCGGCCAG
CTGTCGCTTGCCAACGTGGGCAAGGCCGCCTACGCCGATGCCGCGCGCCTCGCCTCGCGGCAGATGACGCTG
ATGCTGCTGGACGGGCTGTTTGGCTGGGTCGCCAGCGTCGGTACCGAGAAGCCCAAGGTCGACGACAAGGCG
GGCAAGGGACAGGCGAAGGCCGGCGACGACGAGAAGGAACAGCCGTCGCTCCAGTCGCAGGTCTTCAAGCAG
TGGCTGTTGCAGATGAACAGTGTCTGGGGCGCCTACCGCGCGCCGCTGCAGGATATCTCCGGGATGACCGAC
GAGCTGTTCAGAAATGCGTCGGAGAAGCTCGAGAAGTCGCTGTTCAATTTCGCCACTAGCGGAAAGCTGTCC
TTGAGCAACTTCGCCAAGACGGTGATCGACGATGTCGCCCGGATCGCCGCGCGGCAGCTTTCAATGCTCGCC
CTGGACGGATTGTTCGGCTGGATGAATGGCAAGGCCGGCATCACCGAGGCGCAACTGGCCAGCCAGAAACCC
TATACCTCGCTACTGGAAAAGGCCCGCGCAGCTGCGGGACAAGCGGTAGCGGGCGCTCCCGCGGCCCAGGGT
GCCGCGCCAATGCCGGCAGCGGCGATGGATGTCGGCGCGATGGTGGCCACTGCTTCCGGGCAGACCGGGGAC
GGTTCCAAGGTCTCGGCTGGAGGGGCTTCGGCCGCTGGCAAGCCGGTGGGCAGTTGGGTCGAACAGATGGAC
GCCTCCTGGGCGAGCCTGCGCGACCAGGCGCAGGACGTCTCGGGAATGATGGACATGCTGTTTACCAACGCC
TTCACCAATATGGAGAACGCCCTGTTCACCTTTGCCACCACGGGCAAGCTGTCGTTCAAGGATTTCGCCGAC
TCGGTGATCCAGGATATGGCGCGGATCGCCGCGCGGCAGGCGACGCTGCAGATCATCGGCGGCATCGTCGGT
GCGGTCAGCGGGTTCTTCGGTAGCGGCGCAACGGCGGGCTCGCGGATTTCCGACTACACCGGCTCGGACATG
GCCAATTGGGTCAGCAAGCAACGCGCCGGAGGCATGCCTGGGTTCGCCAGGGGCGGTGCCTTCAACGATGGC
ATCCAGAGCGCGCCGGCGCTGTTCAGCATGGCCGGCGGTCGTCCGGCGCTGATCGGCGAGCGTGGGCCGGAA
GCCATCATGCCGCTGAGTCGCGGTTCCGATGGCGTGCTCGGCGTGCGCGCGCTCGGCGGCGGCGAGGGGGGC
AACGTCTTCAATTTCTCCACCAGCGTCAGCCTGGGCGGCGGCCGCGAGGGCGCGGCGACGGCCAGCGGCGAC
GACGGTACGGGACAGCAGCTGGCGGGAATGATCAACGATGCCGCGCGCAACGTGGTGGCGCAGGAGCTGCGC
CCCGGCGGCCTGGTATGGAGGATGGTGAATGGCTGA
Translation:
MATNTDGSLTLDLVLRSEGYRAGMDKVGRINDQKMRAMEARAEKAGKAIGKSLDSSALIASSVLDQALDMLG
RTSRQAGQAKKPVQSAQDKVLAEWKTRQKELGEAWKSYREPLQDLSKLNEALLKNSSDKLDKALLNLSETGQ
LSLANVGKAAYADAARLASRQMTLMLLDGLFGWVASVGTEKPKVDDKAGKGQAKAGDDEKEQPSLQSQVFKQ
WLLQMNSVWGAYRAPLQDISGMTDELFRNASEKLEKSLFNFATSGKLSLSNFAKTVIDDVARIAARQLSMLA
LDGLFGWMNGKAGITEAQLASQKPYTSLLEKARAAAGQAVAGAPAAQGAAPMPAAAMDVGAMVATASGQTGD
GSKVSAGGASAAGKPVGSWVEQMDASWASLRDQAQDVSGMMDMLFTNAFTNMENALFTFATTGKLSFKDFAD
SVIQDMARIAARQATLQIIGGIVGAVSGFFGSGATAGSRISDYTGSDMANWVSKQRAGGMPGFARGGAFNDG
IQSAPALFSMAGGRPALIGERGPEAIMPLSRGSDGVLGVRALGGGEGGNVFNFSTSVSLGGGREGAATASGD
DGTGQQLAGMINDAARNVVAQELRPGGLVWRMVNG*
AnnotationID:509GeneID:500
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:46
Gene Name:
Confidence Code:3
GeneProduct:putative tail length determination protein
Cell Localization:()
Synonyms:PA0636
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1003




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33905




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:500_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:500
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
873
                           PA0636_tr
                           translation of PA0636
                           611
                           99.50
                           99.67
                           0
                           3047.0
     

     
     
36358
                           gb|AAG04025.1|AE004499_4
                           (AE004499) hypothetical protein PA0636 [Pseudomonas aeruginosa PAO1]
                           611
                           99.50
                           99.67
                           0
                           3047.0
     

     
     
36359
                           dbj|BAA83175.1|
                           (AB030825) PRF31~similar to H gene of lambda and gene16 of N15: tail length determination [Pseudomonas aeruginosa]
                           611
                           99.50
                           99.67
                           0
                           3047.0
     

     






      

          
GC ORFID: 43502How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0636Glimmer Score: 

          
Start: 6504754Stop: 6506589

          
Length: 1836


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0636 translation of PA0636Homolog Bit Score 1178.0

          
Other Homologs:  t_PA0636 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACGAATACCGACGGCAGCCTGACGCTCGACCTGGTCCTTCGCAGCGAAGGGTACAGGGCCGGGATG 
GACAAGGTTGGCAGGATCAACGATCAGAAAATGCGTGCCATGGAGGCGCGCGCGGAAAAGGCTGGCAAGGCT 
ATCGGCAAAAGCCTGGACAGTTCGGCACTGATTGCCAGCAGCGTGCTGGACCAGGCGCTGGACATGCTGGGC 
AGGACCAGTCGCCAGGCGGGTCAGGCCAAGAAGCCTGTGCAGAGCGCCCAGGACAAAGTACTGGCCGAGTGG 
AAGACCCGGCAGAAGGAGCTGGGCGAAGCCTGGAAGAGCTATCGCGAACCACTCCAGGATCTGTCCAAGCTC 
AACGAAGCACTACTGAAGAACTCTTCCGACAAGCTCGACAAGGCGCTGCTCAATCTCAGCGAGACCGGCCAG 
CTGTCGCTTGCCAACGTGGGCAAGGCCGCCTACGCCGATGCCGCGCGCCTCGCCTCGCGGCAGATGACGCTG 
ATGCTGCTGGACGGGCTGTTTGGCTGGGTCGCCAGCGTCGGTACCGAGAAGCCCAAGGTCGACGACAAGGCG 
GGCAAGGGACAGGCGAAGGCCGGCGACGACGAGAAGGAACAGCCGTCGCTCCAGTCGCAGGTCTTCAAGCAG 
TGGCTGTTGCAGATGAACAGTGTCTGGGGCGCCTACCGCGCGCCGCTGCAGGATATCTCCGGGATGACCGAC 
GAGCTGTTCAGAAATGCGTCGGAGAAGCTCGAGAAGTCGCTGTTCAATTTCGCCACTAGCGGAAAGCTGTCC 
TTGAGCAACTTCGCCAAGACGGTGATCGACGATGTCGCCCGGATCGCCGCGCGGCAGCTTTCAATGCTCGCC 
CTGGACGGATTGTTCGGCTGGATGAATGGCAAGGCCGGCATCACCGAGGCGCAACTGGCCAGCCAGAAACCC 
TATACCTCGCTACTGGAAAAGGCCCGCGCAGCTGCGGGACAAGCGGTAGCGGGCGCTCCCGCGGCCCAGGGT 
GCCGCGCCAATGCCGGCAGCGGCGATGGATGTCGGCGCGATGGTGGCCACTGCTTCCGGGCAGACCGGGGAC 
GGTTCCAAGGTCTCGGCTGGAGGGGCTTCGGCCGCTGGCAAGCCGGTGGGCAGTTGGGTCGAACAGATGGAC 
GCCTCCTGGGCGAGCCTGCGCGACCAGGCGCAGGACGTCTCGGGAATGATGGACATGCTGTTTACCAACGCC 
TTCACCAATATGGAGAACGCCCTGTTCACCTTTGCCACCACGGGCAAGCTGTCGTTCAAGGATTTCGCCGAC 
TCGGTGATCCAGGATATGGCGCGGATCGCCGCGCGGCAGGCGACGCTGCAGATCATCGGCGGCATCGTCGGT 
GCGGTCAGCGGGTTCTTCGGTAGCGGCGCAACGGCGGGCTCGCGGATTTCCGACTACACCGGCTCGGACATG 
GCCAATTGGGTCAGCAAGCAACGCGCCGGAGGCATGCCTGGGTTCGCCAGGGGCGGTGCCTTCAACGATGGC 
ATCCAGAGCGCGCCGGCGCTGTTCAGCATGGCCGGCGGTCGTCCGGCGCTGATCGGCGAGCGTGGGCCGGAA 
GCCATCATGCCGCTGAGTCGCGGTTCCGATGGCGTGCTCGGCGTGCGCGCGCTCGGCGGCGGCGAGGGGGGC 
AACGTCTTCAATTTCTCCACCAGCGTCAGCCTGGGCGGCGGCCGCGAGGGCGCGGCGACGGCCAGCGGCGAC 
GACGGTACGGGACAGCAGCTGGCGGGAATGATCAACGATGCCGCGCGCAACGTGGTGGCGCAGGAGCTGCGC 
CCCGGCGGCCTGGTATGGAGGATGGTGAATGGCTGA