ViewGene
Locus Name:
GeneID:
Location:

GeneID:50
TrivialName: PA14_46320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46320
PAO1 Ortholog Locus:PA1400
Sequence Length:3288
Protein Length:1095
Start: 4123109
Stop: 4119822
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04789.1|AE004569_7 (AE004569) probable pyruvate carboxylase [Pseudomonas aeruginosa PAO1]
Identities = 1083/1095 (98%), Positives = 1089/1095 (99%)
Sequence:
GTGACCGCTCCCTTCAACGCCTTGCTGATCGCCAACCGCGGCGAGATCGCCATTCGCATCGCTCGCGCCTGC
GCCGACCTGGGTATCCGCTCGGTGGCGGTGTTCGCCGAGGACGATGCCGCTTCCCTGCACGTGCGCAAGGCC
GATGTCGCGCTGCCGCTGGCCGGCCGTGGCGTGGCGGCCTATCTCGACATGGATCGGCTGGTCGCGCTGGCC
TTGGAGCAGGGCTGCGAGGCGATCCATCCGGGCTACGGTTTCCTCGCCGAGAACGGCGAATTCGCCCGGCGC
TGCCAGCGCGCGGGCATCCACTTCGTCGGGCCGCAAGCGGAAGTGCTCGACCTGTTCGGCGACAAGGCTGCC
GCGCGTGCCCTGGCCGAGCGCCTGGAGGTGCCGCTGGTGGCCGGGGTCAACCGCGCGGTCAGCGTCGAAGAG
GCCGAAGCGTTCCTGGAAGGGCTGGGCGATGGCGCCGCGGTGATGCTCAAGGCTCTTGCCGGCGGCGGCGGA
CGTGGCATGCGCGCAGTGGAGGAGGTCGCGCAACTGGCCGATGCCTACCGCCGCTGCCGTGCCGAGGCGCAG
GCGGCGTTCGGCCGGGACGAGTTATACGTCGAGCAACGGGTGGCGCGGGCGCGGCACATCGAGGTACAGGTG
CTCGGTGACGGCAGCGGTGCGGTCAGCCACCTCTGGGAGCGCGATTGCAGCCTGCAACGGCGCCAGCAGAAG
CTGCTGGAGATCGCGCCCAGCCCGGACCTGCCGGAGGCCACCCGCGAGGCGCTGATCGATTGCGCCCTGCGC
ATGGCCGGCGCGGTGCGCTATCGGGGGATCGGTACCTTCGAGTTCCTGGTCGACGAGGAGCGCCCCGGGCAC
TTCTATTTCATGGAAGCCAATCCGCGTATCCAGGTGGAGCACACCGTCACCGAGGAAGTCACCGGGGTTGAC
CTGCTGCACGCCCAGTTGCGTCTCGCCGCCGGTATGGAGCTTGCCGCCCTCGGCCTGGAGCGACCGCCGGCG
ATCGGCGGCTGCGCGGTGCAACTGCGGATCAACCTGGAGACCCTGGCGGCCGACGGCAGCGCCCGTCCGGCG
GTGGGCACTATCGGCGCCTACGAACCGCCCAGCGGTCCCGGCCTGCGGGTGGACGGCTACGGCTATGCCGGC
TATCGGGTCAGCCCCAGCTACGATTCGCTGCTGGCCAAGCTGGTCGTGCGCGGTGCGGATTATCCCGCCGCG
TTGCGCCGGGCCTACCGGGCGCTCTGCGAATTCCGCCTGGAGGGCGTGGCGAGCAACCTGGATCTGCTGCGC
AACCTTCTGCTGCATCCGGCGGTACAGGCCAACCGGGTCGACACCCGCTTCGTCGAAAGCCACCTGGAGACA
CTGCTGGCGCCTATCCCGGCGAGCCATCCGCGGCTCCGCGCCGAGTGCCCGCTCGCCAAGGACGCCGCGCCT
GCGCGGGTCGAGGCGCCACTCGGCAGCCTGCCGCTGCCTGCGCCGAGCAGCGGGGTGCTGGTGGCCCTGGAA
GTGTCCGAGGGCGAGCGGGTGCGTGCCGGCCAGCGGGTCGCGATCCTGGAAGCGATGAAGATGGAATTCGAG
GTCAAGGCACCCGGCGGCGGTATCGTCCGGCGGCTCGCGGCGAGCCTCGGGGAGCCTCTGGAGGAGGGCGCG
ACGCTGCTGTTCCTCGAACCGACGGAGGATGACGACGAGCAGGCACCGACCGAACAGGCGCTGGACCTGGCG
CATATCCGCGCCGATCTCGCCGAGGTACTCGAGCGCCAGGCAGCGCTGGGCGACGAGCGTCGTCCGCAGGCG
CTGGCCAGGCGGCGCAAGACCGGACAGCGTACCGCGCGGGAGAACGTGCTCGACCTGCTGGACGAGGGCAGC
TTCAGCGAATATGGCGGTTTCGCCCTGGCCGCCCAGCGTCGCCGGCGCTCCGCCGAGGAGTTGTTGGAGCTG
AGCCCCGCCGATGGCCTGGTCGCCGGCACCGGTACGGTGGGGGCCGCCAGCTTCGGCGCGCAGGCCGCGCGT
TGCCTGGTGCTGGCCTACGACTACACGGTGTTCGCCGGCACCCAGGGGGTGATGAACCACAAGAAGACCGAC
CGCCTGCTCGGCCTGGCCGAACAGTGGCGCTTGCCGCTGGTGCTGTTCGCCGAGGGTGGCGGCGGGCGCCCG
GGCGATACCGATTTCGTCGGCGTCGCCGGCCTCGATTGCCATACCTTCGTCGGCATGGCCCGGCTCTCCGGG
CTGGTGCCGCTGGTGGGAGTGGTCTCCGGTCGCTGCTTCGCCGGCAATGCCGCGTTGCTGGGCTGCTGCGAT
GTGATCATCGCCACCCGCGACGCCACCATCGGCATGGCCGGCCCGGCGATGATCGAGGGCGGCGGCCTGGGC
CGTTTCGCCGCCGAGGAGGTCGGTCCGACGGGCGTGCAGGGGCCCAACGGAGTGATCGACGTACTGGTGGCG
GACGAGGCCGAAGCGGTCGCGGTGGCCAGGCGCTACCTCGGCTATTTCCAGGGCCCGCTGGCCGACTGGAGT
TGCGCCGACCAGCGCGAGTTGCGCCACCTGGTGCCGGAGAACCGCCTGCGTGCCTATGACATCCGCCAGGCG
ATCGAGGTCCTGGCCGACCGGGGCAGCGTGCTGGAACTGCGGCGCCAGTTCGCTCCCGGCCTGGTCACCGCG
CTGCTGCGGATCGAGGGCCGGGCGTTCGGCCTGATCGCCAACAACCCTGGCCATCTCGGCGGCGCCATCGAT
GCCGCGGCCGGCGACAAGGCCGCGCGCTTCATGCAGTTGTGCGACGCCTTCGACATCCCGATCGTCTCGCTC
TGCGACACCCCTGGCTTCATGGTTGGCCCGGAGGCGGAAAAACAGGCCACGGTGCGCCACGTCTCGCGGATG
TTCGTCAGCGCCGCCAGCCTGACGGTGCCGTTCTTCACCGTGGTCCTGCGCAAGGGCTACGGACTGGGAGCC
CAGGCCATGGCGGCGGGCAGCTTCCATTCGCCGCTGTTCACCGTCGCCTGGCCCAGCGGCGAGTTCGGCGCC
ATGGGCCTGGAAGGCGCGGTGCGGCTGGGCTTCGCCAAGGAGCTGGCGGCCGAGAAAGACCCCCAGCGGCGC
GAGGCGCTGTTCCGCGGCATGGTGGACAAGGCCTACCGCAATGGCAAGGCGCTGAACATGGCCAGCTACCTG
GAGATCGACGCGGTGATCGACCCGGCGGAGACCCGCGCCTGGCTCCTGCGCGGCCTGGCGGTCGCCGGAGAA
CCGGCGCCGAGGACGGGGCGCAAGCGGCCGTTCGTGGATACCTGGTAG
Translation:
MTAPFNALLIANRGEIAIRIARACADLGIRSVAVFAEDDAASLHVRKADVALPLAGRGVAAYLDMDRLVALA
LEQGCEAIHPGYGFLAENGEFARRCQRAGIHFVGPQAEVLDLFGDKAAARALAERLEVPLVAGVNRAVSVEE
AEAFLEGLGDGAAVMLKALAGGGGRGMRAVEEVAQLADAYRRCRAEAQAAFGRDELYVEQRVARARHIEVQV
LGDGSGAVSHLWERDCSLQRRQQKLLEIAPSPDLPEATREALIDCALRMAGAVRYRGIGTFEFLVDEERPGH
FYFMEANPRIQVEHTVTEEVTGVDLLHAQLRLAAGMELAALGLERPPAIGGCAVQLRINLETLAADGSARPA
VGTIGAYEPPSGPGLRVDGYGYAGYRVSPSYDSLLAKLVVRGADYPAALRRAYRALCEFRLEGVASNLDLLR
NLLLHPAVQANRVDTRFVESHLETLLAPIPASHPRLRAECPLAKDAAPARVEAPLGSLPLPAPSSGVLVALE
VSEGERVRAGQRVAILEAMKMEFEVKAPGGGIVRRLAASLGEPLEEGATLLFLEPTEDDDEQAPTEQALDLA
HIRADLAEVLERQAALGDERRPQALARRRKTGQRTARENVLDLLDEGSFSEYGGFALAAQRRRRSAEELLEL
SPADGLVAGTGTVGAASFGAQAARCLVLAYDYTVFAGTQGVMNHKKTDRLLGLAEQWRLPLVLFAEGGGGRP
GDTDFVGVAGLDCHTFVGMARLSGLVPLVGVVSGRCFAGNAALLGCCDVIIATRDATIGMAGPAMIEGGGLG
RFAAEEVGPTGVQGPNGVIDVLVADEAEAVAVARRYLGYFQGPLADWSCADQRELRHLVPENRLRAYDIRQA
IEVLADRGSVLELRRQFAPGLVTALLRIEGRAFGLIANNPGHLGGAIDAAAGDKAARFMQLCDAFDIPIVSL
CDTPGFMVGPEAEKQATVRHVSRMFVSAASLTVPFFTVVLRKGYGLGAQAMAAGSFHSPLFTVAWPSGEFGA
MGLEGAVRLGFAKELAAEKDPQRREALFRGMVDKAYRNGKALNMASYLEIDAVIDPAETRAWLLRGLAVAGE
PAPRTGRKRPFVDTW*
AnnotationID:60GeneID:50
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 19:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative pyruvate carboxylase
Cell Localization:()
Synonyms:pyc
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4799,COG0439
Secondary Functional Category(ies):carbon compound catabolism
EC Number:6.4.1.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF12468.1|AE001863_93 (AE001863) carboxylase [Deinococcus radiodurans]
          Length = 1091

 Score = 1152 bits (2981), Expect = 0.0
 Identities = 619/1095 (56%), Positives = 770/1095 (70%), Gaps = 15/1095 (1%)

>gb|AAK25176.1| (AE005985) carbamoyl-phosphate synthase/carboxyl transferase
            [Caulobacter crescentus CB15]
          Length = 1078

 Score = 1098 bits (2841), Expect = 0.0
 Identities = 590/1081 (54%), Positives = 726/1081 (67%), Gaps = 21/1081 (1%)

>emb|CAB59603.1| (AL939105) pyruvate carboxylase [Streptomyces coelicolor A3(2)]
          Length = 1124

 Score =  393 bits (1009), Expect = e-108
 Identities = 238/512 (46%), Positives = 308/512 (60%), Gaps = 28/512 (5%)








 
Structural Features:
COG4799, Acetyl-CoA_carboxylase, Acetyl-CoA carboxylase, carboxyltransferase component 
(subunits alpha and beta) 
[Lipid metabolism]
CD-Length = 526 residues,  99.0% aligned
Score =  478 bits (1231), Expect = 2e-135
Identities = 190/537 (35%), Positives = 261/537 (48%), Gaps = 29/537 (5%)

COG0439, AccC, Biotin carboxylase [Lipid metabolism]
CD-Length = 449 residues,  99.8% aligned
Score =  464 bits (1195), Expect = 3e-131
Identities = 223/456 (48%), Positives = 289/456 (63%), Gaps = 10/456 (2%)







   
Genomic Context:






   
Comment:
other possible gene name: pyc


















    ReferenceID:14041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37435




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:50_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:50
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
93
                           PA1400_tr
                           translation of PA1400
                           1095
                           98.90
                           99.45
                           0
                           5502.0
     

     
     
11792
                           gb|AAG04789.1|AE004569_7
                           (AE004569) probable pyruvate carboxylase [Pseudomonas aeruginosa PAO1]
                           1095
                           98.81
                           99.45
                           0
                           5499.0
     

     
     
11793
                           emb|CAE26893.1|
                           (BX572597) putative pyruvate carboxylase [Rhodopseudomonas palustris CGA009]
                           1108
                           58.66
                           72.83
                           18
                           3318.0
     

     
     
11794
                           dbj|BAC52557.1|
                           (AP005961) bll7292 [Bradyrhizobium japonicum USDA 110]
                           1107
                           57.81
                           71.99
                           14
                           3245.0
     

     
     
11795
                           gb|AAF12468.1|AE001863_93
                           (AE001863) carboxylase [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           1102
                           56.26
                           69.96
                           18
                           2996.0
     

     






      

          
GC ORFID: 43052How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1400Glimmer Score: 

          
Start: 830800Stop: 834087

          
Length: 3288


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1400 translation of PA1400Homolog Bit Score 2123.0

          
Other Homologs:  t_PA1400 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCGCTCCCTTCAACGCCTTGCTGATCGCCAACCGCGGCGAGATCGCCATTCGCATCGCTCGCGCCTGC 
GCCGACCTGGGTATCCGCTCGGTGGCGGTGTTCGCCGAGGACGATGCCGCTTCCCTGCACGTGCGCAAGGCC 
GATGTCGCGCTGCCGCTGGCCGGCCGTGGCGTGGCGGCCTATCTCGACATGGATCGGCTGGTCGCGCTGGCC 
TTGGAGCAGGGCTGCGAGGCGATCCATCCGGGCTACGGTTTCCTCGCCGAGAACGGCGAATTCGCCCGGCGC 
TGCCAGCGCGCGGGCATCCACTTCGTCGGGCCGCAAGCGGAAGTGCTCGACCTGTTCGGCGACAAGGCTGCC 
GCGCGTGCCCTGGCCGAGCGCCTGGAGGTGCCGCTGGTGGCCGGGGTCAACCGCGCGGTCAGCGTCGAAGAG 
GCCGAAGCGTTCCTGGAAGGGCTGGGCGATGGCGCCGCGGTGATGCTCAAGGCTCTTGCCGGCGGCGGCGGA 
CGTGGCATGCGCGCAGTGGAGGAGGTCGCGCAACTGGCCGATGCCTACCGCCGCTGCCGTGCCGAGGCGCAG 
GCGGCGTTCGGCCGGGACGAGTTATACGTCGAGCAACGGGTGGCGCGGGCGCGGCACATCGAGGTACAGGTG 
CTCGGTGACGGCAGCGGTGCGGTCAGCCACCTCTGGGAGCGCGATTGCAGCCTGCAACGGCGCCAGCAGAAG 
CTGCTGGAGATCGCGCCCAGCCCGGACCTGCCGGAGGCCACCCGCGAGGCGCTGATCGATTGCGCCCTGCGC 
ATGGCCGGCGCGGTGCGCTATCGGGGGATCGGTACCTTCGAGTTCCTGGTCGACGAGGAGCGCCCCGGGCAC 
TTCTATTTCATGGAAGCCAATCCGCGTATCCAGGTGGAGCACACCGTCACCGAGGAAGTCACCGGGGTTGAC 
CTGCTGCACGCCCAGTTGCGTCTCGCCGCCGGTATGGAGCTTGCCGCCCTCGGCCTGGAGCGACCGCCGGCG 
ATCGGCGGCTGCGCGGTGCAACTGCGGATCAACCTGGAGACCCTGGCGGCCGACGGCAGCGCCCGTCCGGCG 
GTGGGCACTATCGGCGCCTACGAACCGCCCAGCGGTCCCGGCCTGCGGGTGGACGGCTACGGCTATGCCGGC 
TATCGGGTCAGCCCCAGCTACGATTCGCTGCTGGCCAAGCTGGTCGTGCGCGGTGCGGATTATCCCGCCGCG 
TTGCGCCGGGCCTACCGGGCGCTCTGCGAATTCCGCCTGGAGGGCGTGGCGAGCAACCTGGATCTGCTGCGC 
AACCTTCTGCTGCATCCGGCGGTACAGGCCAACCGGGTCGACACCCGCTTCGTCGAAAGCCACCTGGAGACA 
CTGCTGGCGCCTATCCCGGCGAGCCATCCGCGGCTCCGCGCCGAGTGCCCGCTCGCCAAGGACGCCGCGCCT 
GCGCGGGTCGAGGCGCCACTCGGCAGCCTGCCGCTGCCTGCGCCGAGCAGCGGGGTGCTGGTGGCCCTGGAA 
GTGTCCGAGGGCGAGCGGGTGCGTGCCGGCCAGCGGGTCGCGATCCTGGAAGCGATGAAGATGGAATTCGAG 
GTCAAGGCACCCGGCGGCGGTATCGTCCGGCGGCTCGCGGCGAGCCTCGGGGAGCCTCTGGAGGAGGGCGCG 
ACGCTGCTGTTCCTCGAACCGACGGAGGATGACGACGAGCAGGCACCGACCGAACAGGCGCTGGACCTGGCG 
CATATCCGCGCCGATCTCGCCGAGGTACTCGAGCGCCAGGCAGCGCTGGGCGACGAGCGTCGTCCGCAGGCG 
CTGGCCAGGCGGCGCAAGACCGGACAGCGTACCGCGCGGGAGAACGTGCTCGACCTGCTGGACGAGGGCAGC 
TTCAGCGAATATGGCGGTTTCGCCCTGGCCGCCCAGCGTCGCCGGCGCTCCGCCGAGGAGTTGTTGGAGCTG 
AGCCCCGCCGATGGCCTGGTCGCCGGCACCGGTACGGTGGGGGCCGCCAGCTTCGGCGCGCAGGCCGCGCGT 
TGCCTGGTGCTGGCCTACGACTACACGGTGTTCGCCGGCACCCAGGGGGTGATGAACCACAAGAAGACCGAC 
CGCCTGCTCGGCCTGGCCGAACAGTGGCGCTTGCCGCTGGTGCTGTTCGCCGAGGGTGGCGGCGGGCGCCCG 
GGCGATACCGATTTCGTCGGCGTCGCCGGCCTCGATTGCCATACCTTCGTCGGCATGGCCCGGCTCTCCGGG 
CTGGTGCCGCTGGTGGGAGTGGTCTCCGGTCGCTGCTTCGCCGGCAATGCCGCGTTGCTGGGCTGCTGCGAT 
GTGATCATCGCCACCCGCGACGCCACCATCGGCATGGCCGGCCCGGCGATGATCGAGGGCGGCGGCCTGGGC 
CGTTTCGCCGCCGAGGAGGTCGGTCCGACGGGCGTGCAGGGGCCCAACGGAGTGATCGACGTACTGGTGGCG 
GACGAGGCCGAAGCGGTCGCGGTGGCCAGGCGCTACCTCGGCTATTTCCAGGGCCCGCTGGCCGACTGGAGT 
TGCGCCGACCAGCGCGAGTTGCGCCACCTGGTGCCGGAGAACCGCCTGCGTGCCTATGACATCCGCCAGGCG 
ATCGAGGTCCTGGCCGACCGGGGCAGCGTGCTGGAACTGCGGCGCCAGTTCGCTCCCGGCCTGGTCACCGCG 
CTGCTGCGGATCGAGGGCCGGGCGTTCGGCCTGATCGCCAACAACCCTGGCCATCTCGGCGGCGCCATCGAT 
GCCGCGGCCGGCGACAAGGCCGCGCGCTTCATGCAGTTGTGCGACGCCTTCGACATCCCGATCGTCTCGCTC 
TGCGACACCCCTGGCTTCATGGTTGGCCCGGAGGCGGAAAAACAGGCCACGGTGCGCCACGTCTCGCGGATG 
TTCGTCAGCGCCGCCAGCCTGACGGTGCCGTTCTTCACCGTGGTCCTGCGCAAGGGCTACGGACTGGGAGCC 
CAGGCCATGGCGGCGGGCAGCTTCCATTCGCCGCTGTTCACCGTCGCCTGGCCCAGCGGCGAGTTCGGCGCC 
ATGGGCCTGGAAGGCGCGGTGCGGCTGGGCTTCGCCAAGGAGCTGGCGGCCGAGAAAGACCCCCAGCGGCGC 
GAGGCGCTGTTCCGCGGCATGGTGGACAAGGCCTACCGCAATGGCAAGGCGCTGAACATGGCCAGCTACCTG 
GAGATCGACGCGGTGATCGACCCGGCGGAGACCCGCGCCTGGCTCCTGCGCGGCCTGGCGGTCGCCGGAGAA 
CCGGCGCCGAGGACGGGGCGCAAGCGGCCGTTCGTGGATACCTGGTAG