ViewGene
Locus Name:
GeneID:
Location:

GeneID:4999
TrivialName: PA14_10020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10020
PAO1 Ortholog Locus:PA4164
Sequence Length:327
Protein Length:108
Start: 862476
Stop: 862150
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07551.1|AE004833_2 (AE004833) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/108 (99%), Positives = 108/108 (100%)
Sequence:
ATGCAGCGACTCTTCGTCTACGGCAGCCTCGGCCCCGGCCGTCCCAACGAACACCTGATGCAGAAGATCGGC
GGGCAATGGCAGGCGGCCAGCCTCCGCGGTCGCCTGCTGGAAAAGGGCTGGGGCGCCGGGATGGGCTTTCCG
GGCCTGGCGATCGACGCCGACGGCGAGGAAATCCACGGCCATGTGTTCGTCTCCGACCGCCTCGCCGAGCAC
TGGCCCGCGCTGGATGAATTCGAAGGCACCGAATACCGGCGCGTGGCGACCCGGGTAACGCTGGCCGACGGC
GCCCAGGTCGATGCCTACGTCTACGCCCTGCGCGACTGA
Translation:
MQRLFVYGSLGPGRPNEHLMQKIGGQWQAASLRGRLLEKGWGAGMGFPGLAIDADGEEIHGHVFVSDRLAEH
WPALDEFEGTEYRRVATRVTLADGAQVDAYVYALRD*
AnnotationID:5004GeneID:4999
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4164
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9998




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36873




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4999_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4999
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7405
                           PA4164_tr
                           translation of PA4164
                           108
                           99.07
                           99.99
                           0
                           573.0
     

     
     
191333
                           gb|AAG07551.1|AE004833_2
                           (AE004833) hypothetical protein PA4164 [Pseudomonas aeruginosa PAO1]
                           108
                           99.07
                           99.99
                           0
                           573.0
     

     
     
191334
                           gb|AAL01561.1|
                           (AY046057) unknown [Escherichia fergusonii]
                           111
                           46.84
                           62.16
                           4
                           293.0
     

     






      

          
GC ORFID: 48001How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4164Glimmer Score: 

          
Start: 4091461Stop: 4091787

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4164 translation of PA4164Homolog Bit Score 225.0

          
Other Homologs:  t_PA4164 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCGACTCTTCGTCTACGGCAGCCTCGGCCCCGGCCGTCCCAACGAACACCTGATGCAGAAGATCGGC 
GGGCAATGGCAGGCGGCCAGCCTCCGCGGTCGCCTGCTGGAAAAGGGCTGGGGCGCCGGGATGGGCTTTCCG 
GGCCTGGCGATCGACGCCGACGGCGAGGAAATCCACGGCCATGTGTTCGTCTCCGACCGCCTCGCCGAGCAC 
TGGCCCGCGCTGGATGAATTCGAAGGCACCGAATACCGGCGCGTGGCGACCCGGGTAACGCTGGCCGACGGC 
GCCCAGGTCGATGCCTACGTCTACGCCCTGCGCGACTGA