ViewGene
Locus Name:
GeneID:
Location:

GeneID:4998
TrivialName: PA14_18320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18320
PAO1 Ortholog Locus:PA3557
Sequence Length:348
Protein Length:115
Start: 1571593
Stop: 1571246
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06945.1|AE004776_8 (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/115 (99%), Positives = 114/115 (99%)
Sequence:
ATGAGCGCCGCGCTGCTGCTCGCCACCCTGCTCATGACCGGCCTCGGCCAGGTTGCGCAGAAGCTCACCGTG
GAGCACTGGCGCCTGGTCGCCGCCGACGGCTGGACGGCGCGCCTGCGCAGTCCGTGGCCGTGGCTGGCGCTG
CTCGCCCTCGGGCTCGGCCTGCTCTGCTGGCTGCTGCTCCTGCAACGGGTGGAAGTCGGCAGCGCCTATCCG
ATGCTGGCGCTGAACTTCGTCCTGGTCACCCTGGCGGCACGCTTCGTCTTCGATGAGCCGGTGGATCGCCGC
CACCTCGCCGGCCTGTTGCTGATCGTCGCCGGCGTGGTCCTGCTCGGGAGGAGCGCATGA
Translation:
MSAALLLATLLMTGLGQVAQKLTVEHWRLVAADGWTARLRSPWPWLALLALGLGLLCWLLLLQRVEVGSAYP
MLALNFVLVTLAARFVFDEPVDRRHLAGLLLIVAGVVLLGRSA*
AnnotationID:5003GeneID:4998
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 05:05:35
Gene Name:
Confidence Code:3
GeneProduct:putative inner membrane protein
Cell Localization:()
Synonyms:PA3557
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21203.1| (AE008803) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 111

 Score = 84.7 bits (208), Expect = 9e-17
 Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 5/115 (4%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9996




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27137




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31989




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4998_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4998
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7404
                           PA3557_tr
                           translation of PA3557
                           115
                           99.13
                           99.13
                           0
                           574.0
     

     
     
191332
                           gb|AAG06945.1|AE004776_8
                           (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           115
                           99.13
                           99.13
                           0
                           574.0
     

     






      

          
GC ORFID: 48000How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3557Glimmer Score: 

          
Start: 3382342Stop: 3382689

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3557 translation of PA3557Homolog Bit Score 225.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2588 (ORF: BLASTX 117.0), t_PA3557 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGCGCTGCTGCTCGCCACCCTGCTCATGACCGGCCTCGGCCAGGTTGCGCAGAAGCTCACCGTG 
GAGCACTGGCGCCTGGTCGCCGCCGACGGCTGGACGGCGCGCCTGCGCAGTCCGTGGCCGTGGCTGGCGCTG 
CTCGCCCTCGGGCTCGGCCTGCTCTGCTGGCTGCTGCTCCTGCAACGGGTGGAAGTCGGCAGCGCCTATCCG 
ATGCTGGCGCTGAACTTCGTCCTGGTCACCCTGGCGGCACGCTTCGTCTTCGATGAGCCGGTGGATCGCCGC 
CACCTCGCCGGCCTGTTGCTGATCGTCGCCGGCGTGGTCCTGCTCGGGAGGAGCGCATGA