ViewGene
Locus Name:
GeneID:
Location:

GeneID:4997
TrivialName: PA14_26550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26550
PAO1 Ortholog Locus:PA2901
Sequence Length:360
Protein Length:119
Start: 2313591
Stop: 2313950
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06289.1|AE004716_7 (AE004716) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
GTGAGCATTCGATGGATGATGGCCGCAGGCCTCGCCGCGCTGACCCTGAGCGGTTGTGCGAGCAACGACCCG
GCTCCGCTGGAGCAGATGCGCCTGACCGAACAGGCGCTGGAGCAGGCCAAGGCGGTGGGTGCCACCGACGAC
GTGGCCGAGCTGAAACTGGCCCAGGACAAGTACGCCGCGGCGCAGATCGCGATGACCGCGGAGTCCTACAAG
AAGGCGCGCCTGTTGGCCGAGCAGGCCGAGCTGGACGCACGCCTCGCCGAGTCCAAGGTGCTGACGCAGAAG
AGCAAGGACCAGCTCGGCGAGCTGGACAAGAGCCTGAAACGTCTGCGCAAGCAACTGGGGGAGACCGACTGA
Translation:
MSIRWMMAAGLAALTLSGCASNDPAPLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYK
KARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGETD*
AnnotationID:5002GeneID:4997
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:50
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA2901
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55704.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 117

 Score =  130 bits (327), Expect = 1e-30
 Identities = 70/117 (59%), Positives = 93/117 (79%), Gaps = 2/117 (1%)

>gb|AAN69780.1|AE016614_6 (AE016789) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 117

 Score =  125 bits (313), Expect = 6e-29
 Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 1/105 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15238




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27135




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36153




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4997_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4997
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7403
                           PA2901_tr
                           translation of PA2901
                           119
                           99.99
                           99.99
                           0
                           574.0
     

     
     
191329
                           gb|AAG06289.1|AE004716_7
                           (AE004716) hypothetical protein PA2901 [Pseudomonas aeruginosa PAO1]
                           119
                           99.15
                           99.99
                           0
                           571.0
     

     
     
191330
                           gb|AAO55704.1|
                           (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           119
                           57.98
                           78.15
                           2
                           327.0
     

     
     
191331
                           gb|AAN69780.1|AE016614_6
                           (AE016789) lipoprotein, putative [Pseudomonas putida KT2440]
                           121
                           57.85
                           71.90
                           6
                           304.0
     

     






      

          
GC ORFID: 47999How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2901Glimmer Score: 

          
Start: 2640335Stop: 2639976

          
Length: 360


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2901 translation of PA2901Homolog Bit Score 225.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene983 (ORF: BLASTX 130.0), t_PA2901 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCATTCGATGGATGATGGCCGCAGGCCTCGCCGCGCTGACCCTGAGCGGTTGTGCGAGCAACGACCCG 
GCTCCGCTGGAGCAGATGCGCCTGACCGAACAGGCGCTGGAGCAGGCCAAGGCGGTGGGTGCCACCGACGAC 
GTGGCCGAGCTGAAACTGGCCCAGGACAAGTACGCCGCGGCGCAGATCGCGATGACCGCGGAGTCCTACAAG 
AAGGCGCGCCTGTTGGCCGAGCAGGCCGAGCTGGACGCACGCCTCGCCGAGTCCAAGGTGCTGACGCAGAAG 
AGCAAGGACCAGCTCGGCGAGCTGGACAAGAGCCTGAAACGTCTGCGCAAGCAACTGGGGGAGACCGACTGA