ViewGene
Locus Name:
GeneID:
Location:

GeneID:4995
TrivialName: PA14_49960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49960
PAO1 Ortholog Locus:PA1114
Sequence Length:336
Protein Length:111
Start: 4442058
Stop: 4442393
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04503.1|AE004541_8 (AE004541) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/111 (99%), Positives = 110/111 (99%)
Sequence:
ATGAAGCACCTGGCATTCCTCGCCCTCGGCGGACTCCTGCTGGCGCCCCTGGCCGAAGCGGCCAGCTTCGAT
TGCGAAAAGGCTGAGCGAGCGGACGAAAAGGCCATCTGCGCGAACCGGGCGCTGAACGACAAGGACGTCGAG
ATGAGCGTCAAGTACCACTTCCTCCGCGGCCTGTTCGCCATGGGCGGCCGCGGCGCCATGCAGGACCGGCAG
CAGGACTGGCTGCGTGAGCGCCGGCGCTGCGGTGGCGACACCGACTGCCTCTCCCGTGCCTACGCGCAGCGT
ATCGACGAGCTGGACAAGCAGTACGCGGGCATCGACAAGCCGCTCTGA
Translation:
MKHLAFLALGGLLLAPLAEAASFDCEKAERADEKAICANRALNDKDVEMSVKYHFLRGLFAMGGRGAMQDRQ
QDWLRERRRCGGDTDCLSRAYAQRIDELDKQYAGIDKPL*
AnnotationID:5000GeneID:4995
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1114
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]
             CD-Length = 185 residues, only  58.9% aligned
             Score =  140 bits (354), Expect = 4e-35






   
Genomic Context:






   
Comment:


















    ReferenceID:9990




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4995
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7401
                           PA1114_tr
                           translation of PA1114
                           111
                           99.09
                           99.09
                           0
                           573.0
     

     
     
191324
                           gb|AAG04503.1|AE004541_8
                           (AE004541) hypothetical protein PA1114 [Pseudomonas aeruginosa PAO1]
                           111
                           99.09
                           99.09
                           0
                           573.0
     

     
     
191325
                           gb|AAO69309.1|
                           (AE016839) putative secreted protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           114
                           59.64
                           72.80
                           8
                           335.0
     

     
     
191326
                           emb|CAD08360.1|
                           (AL627269) putative secreted protein [Salmonella enterica subsp. enterica serovar Typhi]
                           114
                           59.64
                           72.80
                           8
                           335.0
     

     
     
191327
                           gb|AAL20165.1|
                           (AE008754) putative periplasmic protein [Salmonella typhimurium LT2]
                           114
                           59.64
                           72.80
                           8
                           334.0
     

     






      

          
GC ORFID: 47997How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1114Glimmer Score: 

          
Start: 511850Stop: 511515

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1114 translation of PA1114Homolog Bit Score 225.0

          
Other Homologs:  t_PA1114 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCACCTGGCATTCCTCGCCCTCGGCGGACTCCTGCTGGCGCCCCTGGCCGAAGCGGCCAGCTTCGAT 
TGCGAAAAGGCTGAGCGAGCGGACGAAAAGGCCATCTGCGCGAACCGGGCGCTGAACGACAAGGACGTCGAG 
ATGAGCGTCAAGTACCACTTCCTCCGCGGCCTGTTCGCCATGGGCGGCCGCGGCGCCATGCAGGACCGGCAG 
CAGGACTGGCTGCGTGAGCGCCGGCGCTGCGGTGGCGACACCGACTGCCTCTCCCGTGCCTACGCGCAGCGT 
ATCGACGAGCTGGACAAGCAGTACGCGGGCATCGACAAGCCGCTCTGA