ViewGene
Locus Name:
GeneID:
Location:

GeneID:4994
TrivialName: PA14_59230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59230
PAO1 Ortholog Locus:PA0984
Sequence Length:327
Protein Length:108
Start: 5277171
Stop: 5276845
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84212.1| (AY273869) colicin immunity protein [Pseudomonas aeruginosa]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
TTGAGCTTTAAATACTATTGGGCTAAATTTTTCTGGGGAGCTTTCTTCTTTGTTTTAGTCGCTTGGAAAGGC
TCCGTATTTCCAAGCCTGGCATCAGTTAACCCCTTGGTAGTGGCTGGATTCAGTACTATCCTGTTTCCTTTC
TCGGTAAGGCTTGTTGAAGACTTCGCTTTAAAATATACGGAAAAAGAGTTCTGGGTCACAGGTTTTTTCTCC
GAAACCCCTGCAAAAACAGGATTGTATGCAGTCTTTTATTTGGCTTGTTATTTGTTTTCAATTCCCTTGGGG
ATGATTTTTTTATTCTATAAATACGGAAAGGCCTCGTAG
Translation:
MSFKYYWAKFFWGAFFFVLVAWKGSVFPSLASVNPLVVAGFSTILFPFSVRLVEDFALKYTEKEFWVTGFFS
ETPAKTGLYAVFYLACYLFSIPLGMIFLFYKYGKAS*
AnnotationID:4999GeneID:4994
AnnotatorUID: diggins
Modification Date/Time: 2006-01-22 10:10:30
Gene Name:
Confidence Code:3
GeneProduct:colicin immunity protein
Cell Localization:()
Synonyms:PA0984
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15234




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4994
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
191322
                           gb|AAP84212.1|
                           (AY273869) colicin immunity protein [Pseudomonas aeruginosa]
                           108
                           99.07
                           99.99
                           0
                           575.0
     

     
     
7400
                           PA0984_tr
                           translation of PA0984
                           108
                           95.37
                           99.07
                           0
                           561.0
     

     
     
191323
                           gb|AAG04373.1|AE004531_10
                           (AE004531) colicin immunity protein [Pseudomonas aeruginosa PAO1]
                           108
                           94.44
                           99.07
                           0
                           559.0
     

     






      

          
GC ORFID: 47996How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL087Glimmer Score: 

          
Start: 4540850Stop: 4540524

          
Length: 327


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL087 108 Homolog: PA0984 / colicin immunity protein / Pathogenicity-related / P.aeruginosa / PA01 (AAG04373) translation of RL087Homolog Bit Score 226.0

          
Other Homologs:  t_PA0984 (ORF: BLASTX 220.0)

          
GC ORF Sequence

           
TTGAGCTTTAAATACTATTGGGCTAAATTTTTCTGGGGAGCTTTCTTCTTTGTTTTAGTCGCTTGGAAAGGC 
TCCGTATTTCCAAGCCTGGCATCAGTTAACCCCTTGGTAGTGGCTGGATTCAGTACTATCCTGTTTCCTTTC 
TCGGTAAGGCTTGTTGAAGACTTCGCTTTAAAATATACGGAAAAAGAGTTCTGGGTCACAGGTTTTTTCTCC 
GAAACCCCTGCAAAAACAGGATTGTATGCAGTCTTTTATTTGGCTTGTTATTTGTTTTCAATTCCCTTGGGG 
ATGATTTTTTTATTCTATAAATACGGAAAGGCCTCGTAG