ViewGene
Locus Name:
GeneID:
Location:

GeneID:4993
TrivialName: PA14_69640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69640
PAO1 Ortholog Locus:PA5275
Sequence Length:336
Protein Length:111
Start: 6214282
Stop: 6213947
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08660.1|AE004940_4 (AE004940) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 111/111 (100%), Positives = 111/111 (100%)
Sequence:
ATGAGTACGATGAATGAAGCGCGTTTCCACGACCTGGTCGATGCGCTCCAGCAGCAGGTGGAAGACGCCTTC
GATGACAGCGACCTGGATCTCGACCTGGAGAACGCCGGCGGCGTGCTCACCGTACGCTTCGAGAACGGCTCG
CAGCTGATCCTCAGCCGCCAGGCGCCGTTGCGCCAGTTGTGGGTGGCGGCGAAGTCGGGCGGCTTCCACTTC
GATTACGACGAGGCCAGCGGTCTCTGGCGCCACGATGGCAGCCAGGAACCGCTGGGCGCGCTGCTCAACCGG
GCGACCCTGGAGCAGGGGGGCGAGGATGTCGAGTTCCCCGGCCTCTGA
Translation:
MSTMNEARFHDLVDALQQQVEDAFDDSDLDLDLENAGGVLTVRFENGSQLILSRQAPLRQLWVAAKSGGFHF
DYDEASGLWRHDGSQEPLGALLNRATLEQGGEDVEFPGL*
AnnotationID:4998GeneID:4993
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative CyaY protein
Cell Localization:()
Synonyms:cyaY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative frataxin
Functional Category Confidence Code:5
COGs:cd00503
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53773.1| (AE016856) cyaY protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 110

 Score =  147 bits (370), Expect = 1e-35
 Identities = 70/106 (66%), Positives = 81/106 (76%)

>gb|AAN70790.1|AE016723_2 (AE016793) cyaY protein [Pseudomonas putida KT2440]
          Length = 110

 Score =  142 bits (357), Expect = 5e-34
 Identities = 67/106 (63%), Positives = 84/106 (79%)








 
Structural Features:
cd00503, Frataxin
CD-Length = 105 residues, 100.0% aligned
Score =  125 bits (316), Expect = 1e-30
Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 4/107 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9986




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34830




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4993_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4993
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7399
                           PA5275_tr
                           translation of PA5275
                           111
                           99.99
                           99.99
                           0
                           577.0
     

     
     
191318
                           gb|AAG08660.1|AE004940_4
                           (AE004940) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           111
                           99.99
                           99.99
                           0
                           577.0
     

     
     
191319
                           gb|AAO53773.1|
                           (AE016856) cyaY protein [Pseudomonas syringae pv. tomato str. DC3000]
                           111
                           63.06
                           73.87
                           1
                           368.0
     

     
     
191320
                           gb|AAN70790.1|AE016723_2
                           (AE016793) cyaY protein [Pseudomonas putida KT2440]
                           111
                           60.36
                           76.57
                           1
                           355.0
     

     
     
191321
                           emb|CAA44892.1|
                           (X63207) cyaY [Erwinia chrysanthemi]
                           113
                           44.24
                           61.06
                           9
                           265.0
     

     






      

          
GC ORFID: 47995How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5275Glimmer Score: 

          
Start: 5477969Stop: 5477634

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5275 translation of PA5275Homolog Bit Score 226.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3965 (ORF: BLASTX 145.0), t_PA5275 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTACGATGAATGAAGCGCGTTTCCACGACCTGGTCGATGCGCTCCAGCAGCAGGTGGAAGACGCCTTC 
GATGACAGCGACCTGGATCTCGACCTGGAGAACGCCGGCGGCGTGCTCACCGTACGCTTCGAGAACGGCTCG 
CAGCTGATCCTCAGCCGCCAGGCGCCGTTGCGCCAGTTGTGGGTGGCGGCGAAGTCGGGCGGCTTCCACTTC 
GATTACGACGAGGCCAGCGGTCTCTGGCGCCACGATGGCAGCCAGGAACCGCTGGGCGCGCTGCTCAACCGG 
GCGACCCTGGAGCAGGGGGGCGAGGATGTCGAGTTCCCCGGCCTCTGA