ViewGene
Locus Name:
GeneID:
Location:

GeneID:4992
TrivialName: PA14_67140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67140
PAO1 Ortholog Locus:PA5083
Sequence Length:351
Protein Length:116
Start: 5993626
Stop: 5993276
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08468.1|AE004921_5 (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTT
TCCGGCCAGGTGCCGGGCCAGGCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCG
CTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACCATCTACCTGAAGGACATCGCCCGC
GATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCGCCCAGCCGGACCACCGTC
CAGGCGGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGA
Translation:
MEPTRIATNDRLSAAVCFDALVFLSGQVPGQAEDIHGQTREVLAKIDALLAEAGSRKERILSATIYLKDIAR
DFAALNEVWTQWLPTGQAPSRTTVQAELARPSVLVEITVVAARG*
AnnotationID:4997GeneID:4992
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative translation initiation inhibitor
Cell Localization:()
Synonyms:PA5083 Zoom In
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative endoribonuclease L-PSP
Functional Category Confidence Code:5
COGs:COG0251,pfam01042
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
[Translation, ribosomal structure and biogenesis]
CD-Length = 130 residues,  93.8% aligned
Score =  106 bits (267), Expect = 5e-25
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. 
CD-Length = 120 residues,  97.5% aligned
Score = 89.1 bits (221), Expect = 1e-19
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 8/118 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9984




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34979




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4992_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4992
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7397
                           PA5083_tr
                           translation of PA5083
                           116
                           99.99
                           99.99
                           0
                           575.0
     

     
     
191311
                           gb|AAG08468.1|AE004921_5
                           (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           116
                           99.99
                           99.99
                           0
                           575.0
     

     
     
7398
                           PA5303_tr
                           translation of PA5303
                           120
                           52.50
                           65.00
                           7
                           283.0
     

     
     
191313
                           gb|AAG08688.1|AE004943_4
                           (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           120
                           52.50
                           65.00
                           7
                           283.0
     

     
     
191312
                           gb|AAN70012.1|AE016639_8
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           117
                           51.28
                           68.37
                           1
                           287.0
     

     






      

          
GC ORFID: 47994How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5083Glimmer Score: 

          
Start: 5257311Stop: 5256961

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5083 translation of PA5083Homolog Bit Score 226.0

          
Other Homologs:  t_PA5303 (ORF: BLASTX 114.0), psyr_15may02_Scaffold2_revised_gene3158 (ORF: BLASTX 112.0), t_PA5083 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTT 
TCCGGCCAGGTGCCGGGCCAGGCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCG 
CTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACCATCTACCTGAAGGACATCGCCCGC 
GATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCGCCCAGCCGGACCACCGTC 
CAGGCGGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGA