ViewGene
Locus Name:
GeneID:
Location:

GeneID:4991
TrivialName: PA14_16680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16680
PAO1 Ortholog Locus:PA3688
Sequence Length:345
Protein Length:114
Start: 1427418
Stop: 1427074
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07076.1|AE004788_6 (AE004788) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/114 (99%), Positives = 113/114 (99%)
Sequence:
ATGAAGATCCGTGAGCTTGTCCGCCATTGGGAACACACCGCCAAGGGCCGCATGGCCCGCAACCACTACAGC
ATCCCGCTGGACGTCGAAAGCGCCGCGCGCCTCGCCGCGCTGCACGAGATGTATCCGCGGCGCAGCGTCGAG
GAACTACTGGGCGAGCTGGTCGGCGCCGCCCTGGAAGAACTGGAGGCGAGCTTTCCCTACGTGAAGGGGAGT
CAGGTGGTGGCCACCGACGAACAGGGCGATCCGCTCTATGAGGATGTCGGCCCTACCCCACGCTTCCTGTCG
CTCTCGCGCAAGTACCTGCACGAACTGGTCGCGCAACAGGACACCTCCAGTCACTGA
Translation:
MKIRELVRHWEHTAKGRMARNHYSIPLDVESAARLAALHEMYPRRSVEELLGELVGAALEELEASFPYVKGS
QVVATDEQGDPLYEDVGPTPRFLSLSRKYLHELVAQQDTSSH*
AnnotationID:4996GeneID:4991
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3688
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9982




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4991
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7396
                           PA3688_tr
                           translation of PA3688
                           114
                           99.12
                           99.12
                           0
                           577.0
     

     
     
191309
                           gb|AAG07076.1|AE004788_6
                           (AE004788) hypothetical protein PA3688 [Pseudomonas aeruginosa PAO1]
                           114
                           99.12
                           99.12
                           0
                           577.0
     

     
     
191310
                           gb|AAN67125.1|AE016341_8
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           126
                           61.90
                           73.80
                           13
                           394.0
     

     






      

          
GC ORFID: 47993How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3688Glimmer Score: 

          
Start: 3526519Stop: 3526863

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3688 translation of PA3688Homolog Bit Score 226.0

          
Other Homologs:  t_PA3688 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATCCGTGAGCTTGTCCGCCATTGGGAACACACCGCCAAGGGCCGCATGGCCCGCAACCACTACAGC 
ATCCCGCTGGACGTCGAAAGCGCCGCGCGCCTCGCCGCGCTGCACGAGATGTATCCGCGGCGCAGCGTCGAG 
GAACTACTGGGCGAGCTGGTCGGCGCCGCCCTGGAAGAACTGGAGGCGAGCTTTCCCTACGTGAAGGGGAGT 
CAGGTGGTGGCCACCGACGAACAGGGCGATCCGCTCTATGAGGATGTCGGCCCTACCCCACGCTTCCTGTCG 
CTCTCGCGCAAGTACCTGCACGAACTGGTCGCGCAACAGGACACCTCCAGTCACTGA