ViewGene

Locus Name:
GeneID:
Location:

GeneID:4990
TrivialName: PA14_20800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20800
PAO1 Ortholog Locus:PA3345
Sequence Length:351
Protein Length:116
Start: 1789642
Stop: 1789992
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06733.1|AE004757_2 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 115/116 (99%), Positives = 116/116 (100%)
Sequence:
ATGTCCGCGCCGCATCTCGATGATCGTGTTCTGGCTTCGTTGCAGGAGGTCATGGAGGACGAATATCCGGTC
CTGCTGGATACCTTCGTGCTCGACTCCGAGGAGCGCCTGCGCAGCCTGCATGCCGCCCTCCAGGCCGGCGAT
GCCCAGGCTTTGCGGCATACCGCACACAGCTTCAAGGGAGGCAGCAGCAACATGGGCGCGGTACTCCTCGCC
GGCTACTGCAAGGAGCTGGAAGAAAGCGCCAGGCGCGGTGACCTGCAACGGGCGCCGGCGCTGATCGAACAG
ATGGAGCGCGAATTCGCCATCGTCCGCATCCTTTTCAAACAGGAACGTCAGCGCTATCGCTGA
Translation:
MSAPHLDDRVLASLQEVMEDEYPVLLDTFVLDSEERLRSLHAALQAGDAQALRHTAHSFKGGSSNMGAVLLA
GYCKELEESARRGDLQRAPALIEQMEREFAIVRILFKQERQRYR*
AnnotationID:4995GeneID:4990
AnnotatorUID: diggins
Modification Date/Time: 2005-08-24 06:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative histidine-containing phosphotransfer (HPt) domain
Cell Localization:()
Synonyms:PA3345
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00088,COG2198
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd00088, HPT, Histidine Phosphotransfer domain, involved in 
signalling through a two part component systems
CD-Length = 94 residues,  96.8% aligned
Score = 36.9 bits (85), Expect = 6e-04
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]
CD-Length = 122 residues,  92.6% aligned
Score = 55.5 bits (133), Expect = 1e-09
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Genomic Context:
Comment:
ReferenceID:9980
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27121
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32216
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4990_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4990

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7395 PA3345_tr translation of PA3345 116 99.13 99.99 0 575.0
191306 gb|AAG06733.1|AE004757_2 (AE004757) hypothetical protein PA3345 [Pseudomonas aeruginosa PAO1] 116 99.13 99.99 0 575.0
191307 gb|AAO55483.1| (AE016862) Hpt domain protein [Pseudomonas syringae pv. tomato str. DC3000] 119 52.94 64.70 4 269.0
191308 gb|AAN69940.1|AE016632_11 (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440] 118 47.45 61.86 8 250.0
GC ORFID: 47992How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3345Glimmer Score:
Start: 3164290Stop: 3163940
Length: 351
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3345 translation of PA3345Homolog Bit Score 226.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7925 (ORF: BLASTX 102.0), t_PA3345 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGCGCCGCATCTCGATGATCGTGTTCTGGCTTCGTTGCAGGAGGTCATGGAGGACGAATATCCGGTC
CTGCTGGATACCTTCGTGCTCGACTCCGAGGAGCGCCTGCGCAGCCTGCATGCCGCCCTCCAGGCCGGCGAT
GCCCAGGCTTTGCGGCATACCGCACACAGCTTCAAGGGAGGCAGCAGCAACATGGGCGCGGTACTCCTCGCC
GGCTACTGCAAGGAGCTGGAAGAAAGCGCCAGGCGCGGTGACCTGCAACGGGCGCCGGCGCTGATCGAACAG
ATGGAGCGCGAATTCGCCATCGTCCGCATCCTTTTCAAACAGGAACGTCAGCGCTATCGCTGA