ViewGene
Locus Name:
GeneID:
Location:

GeneID:4987
TrivialName: PA14_08100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08100
PAO1 Ortholog Locus:PA0624
Sequence Length:345
Protein Length:114
Start: 695775
Stop: 696119
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04013.1|AE004498_8 (AE004498) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGACCCAAGAGAATCGACTGCCGGGCTGGCTGACGCTGGATGCCGACGCCGCCCTCGTTCGTCTCTCGCGT
CCGGCACAGTGCAACGGGGTCAGCGTCGACACGCTGACCCTGCGTGCACCCACCGTGCGTGATATCCGCCTG
GCCGGCAAGGTGGCCGGCGACGATGCCGAGGAGCGCGAACTGCAACTGTTCGCCTCGCTGGCGCAGGTCAGC
CGCCAGGACCTGGAGGGGCTGAAGCTGAGCGACTACCAGCGGCTGCAAGGAGCCTACTTTCGCCTGGTGCAA
GACGACACGGACGACACCTTCGCGTATGCGTCAACTGGCGAGGCGCCTGGCCATTGA
Translation:
MTQENRLPGWLTLDADAALVRLSRPAQCNGVSVDTLTLRAPTVRDIRLAGKVAGDDAEERELQLFASLAQVS
RQDLEGLKLSDYQRLQGAYFRLVQDDTDDTFAYASTGEAPGH*
AnnotationID:4992GeneID:4987
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0624
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9974




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27115




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4987
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7392
                           PA0624_tr
                           translation of PA0624
                           114
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191293
                           gb|AAG04013.1|AE004498_8
                           (AE004498) hypothetical protein PA0624 [Pseudomonas aeruginosa PAO1]
                           114
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191294
                           dbj|BAA83162.1|
                           (AB030825) hypothetical protein [Pseudomonas aeruginosa]
                           114
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191295
                           gb|AAO56872.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           114
                           54.38
                           63.15
                           14
                           305.0
     

     






      

          
GC ORFID: 47989How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0624Glimmer Score: 

          
Start: 6497118Stop: 6497462

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0624 translation of PA0624Homolog Bit Score 227.0

          
Other Homologs:  t_PA0624 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAAGAGAATCGACTGCCGGGCTGGCTGACGCTGGATGCCGACGCCGCCCTCGTTCGTCTCTCGCGT 
CCGGCACAGTGCAACGGGGTCAGCGTCGACACGCTGACCCTGCGTGCACCCACCGTGCGTGATATCCGCCTG 
GCCGGCAAGGTGGCCGGCGACGATGCCGAGGAGCGCGAACTGCAACTGTTCGCCTCGCTGGCGCAGGTCAGC 
CGCCAGGACCTGGAGGGGCTGAAGCTGAGCGACTACCAGCGGCTGCAAGGAGCCTACTTTCGCCTGGTGCAA 
GACGACACGGACGACACCTTCGCGTATGCGTCAACTGGCGAGGCGCCTGGCCATTGA