ViewGene
Locus Name:
GeneID:
Location:

GeneID:4986
TrivialName: PA14_08220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08220
PAO1 Ortholog Locus:PA0634
Sequence Length:348
Protein Length:115
Start: 702733
Stop: 703080
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04023.1|AE004499_2 (AE004499) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 115/115 (100%), Positives = 115/115 (100%)
Sequence:
ATGAATCTCAACGAACTTCGTGCGGCGGGCGGTTTCATCGAGTCGGCGCTGGTGCGCAAGGAGATTACCTGG
ACCCGCGTTCCCGCCGGCAGGAAGAAGGCGGTCAGCGACACCTTCCAGGTGTTCGTCCGACGCAACAGTTTT
GGCGCGGTGGAGCGCCTGTTCTCCGCCGAAGGCGACCAGCAGAGCCGCAACGCGCGCTACCTCGCCGAATGC
ATTCGCCTGGGCGAGACGGGAGAGGAAAGCCTGACCTACGAACAGGCCTACGACCTCGACCCGGCGCTGGGC
TTCCTGCTGCTGCAGGCGGTCGGTGAGGTCAACCGGGTCGAGGACGCGGAAAAAAACTGA
Translation:
MNLNELRAAGGFIESALVRKEITWTRVPAGRKKAVSDTFQVFVRRNSFGAVERLFSAEGDQQSRNARYLAEC
IRLGETGEESLTYEQAYDLDPALGFLLLQAVGEVNRVEDAEKN*
AnnotationID:4991GeneID:4986
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0634
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9972




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4986
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7391
                           PA0634_tr
                           translation of PA0634
                           115
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191290
                           gb|AAG04023.1|AE004499_2
                           (AE004499) hypothetical protein PA0634 [Pseudomonas aeruginosa PAO1]
                           115
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191291
                           dbj|BAA83141.1|
                           (AB030826) hypothetical protein [Pseudomonas aeruginosa]
                           115
                           99.99
                           99.99
                           0
                           578.0
     

     
     
191292
                           dbj|BAA83173.1|
                           (AB030825) hypothetical protein [Pseudomonas aeruginosa]
                           115
                           99.99
                           99.99
                           0
                           578.0
     

     






      

          
GC ORFID: 47988How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0634Glimmer Score: 

          
Start: 6504076Stop: 6504423

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0634 translation of PA0634Homolog Bit Score 227.0

          
Other Homologs:  t_PA0634 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCTCAACGAACTTCGTGCGGCGGGCGGTTTCATCGAGTCGGCGCTGGTGCGCAAGGAGATTACCTGG 
ACCCGCGTTCCCGCCGGCAGGAAGAAGGCGGTCAGCGACACCTTCCAGGTGTTCGTCCGACGCAACAGTTTT 
GGCGCGGTGGAGCGCCTGTTCTCCGCCGAAGGCGACCAGCAGAGCCGCAACGCGCGCTACCTCGCCGAATGC 
ATTCGCCTGGGCGAGACGGGAGAGGAAAGCCTGACCTACGAACAGGCCTACGACCTCGACCCGGCGCTGGGC 
TTCCTGCTGCTGCAGGCGGTCGGTGAGGTCAACCGGGTCGAGGACGCGGAAAAAAACTGA