ViewGene

Locus Name:
GeneID:
Location:

GeneID:4985
TrivialName: PA14_33580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33580
PAO1 Ortholog Locus:PA2405
Sequence Length:330
Protein Length:109
Start: 2954552
Stop: 2954223
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05793.1|AE004668_3 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGAGCATCCACACCCGCCCCTGGCGCCTGCCCCTGGCCGCCCTGTTGCTCGGCCTGAGCGGCGCGGCCCTG
GCGCACAACCCGATCTGCGAATGCGAGGAAGTGCAGGCCGGCGAGATCCGCTGCAAGGGCGGCTTCTCCGAC
GGCAGCGGCGCCCCCGGCGTAACCCTCGACGTGATCGGCTACGACGAGCAGATCCTGGTTCCCGGCAAGCTC
GGCGCCGACTCGACCCTGACCTTCAAGCGTCCCGACGGCGAGTTCTACGTGCTGTTCGACGCCGGTCCCGGC
CACGTGGTGGAAATCGACCACGCCGACATCGCCGCGCCATGA
Translation:
MSIHTRPWRLPLAALLLGLSGAALAHNPICECEEVQAGEIRCKGGFSDGSGAPGVTLDVIGYDEQILVPGKL
GADSTLTFKRPDGEFYVLFDAGPGHVVEIDHADIAAP*
AnnotationID:4990GeneID:4985
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2405
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9970
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27111
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4985

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7390 PA2405_tr translation of PA2405 109 99.99 99.99 0 579.0
191285 gb|AAG05793.1|AE004668_3 (AE004668) hypothetical protein PA2405 [Pseudomonas aeruginosa PAO1] 109 99.99 99.99 0 579.0
191286 gb|AAO17445.1| (AF540993) PA2405 [Pseudomonas aeruginosa] 109 99.99 99.99 0 579.0
191287 gb|AAO17434.1| (AF540992) PA2405 [Pseudomonas aeruginosa] 109 99.99 99.99 0 579.0
191289 gb|AAN69393.1|AE016576_3 (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440] 109 73.39 81.65 3 408.0
GC ORFID: 47987How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2405Glimmer Score:
Start: 1999364Stop: 1999693
Length: 330
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2405 translation of PA2405Homolog Bit Score 227.0
Other Homologs: t_PA2405 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCATCCACACCCGCCCCTGGCGCCTGCCCCTGGCCGCCCTGTTGCTCGGCCTGAGCGGCGCGGCCCTG
GCGCACAACCCGATCTGCGAATGCGAGGAAGTGCAGGCCGGCGAGATCCGCTGCAAGGGCGGCTTCTCCGAC
GGCAGCGGCGCCCCCGGCGTAACCCTCGACGTGATCGGCTACGACGAGCAGATCCTGGTTCCCGGCAAGCTC
GGCGCCGACTCGACCCTGACCTTCAAGCGTCCCGACGGCGAGTTCTACGTGCTGTTCGACGCCGGTCCCGGC
CACGTGGTGGAAATCGACCACGCCGACATCGCCGCGCCATGA