ViewGene
Locus Name:
GeneID:
Location:

GeneID:4984
TrivialName: PA14_48400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48400
PAO1 Ortholog Locus:PA1228
Sequence Length:351
Protein Length:116
Start: 4304129
Stop: 4304479
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04617.1|AE004552_7 (AE004552) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/116 (98%), Positives = 114/116 (98%)
Sequence:
ATGGTTACGCACTTCTTGAGCGAATCCGGCCAGGCAGCCTGCGGGCGCGGCGACAGCAACGTGAACGGCTCG
AGCGATGTCGGCCAGGTCAGTTGCAAGACCTGCCGGCGCACCAACGCCTTCGCCCAGGCCCAGGAAAACGCC
GCTCCGGCCAGTGCCCCTGTCACCCCCACCGCCGCTGCGCCAGTGACCGACAAGGCCGCGCCGCGGCCGAAA
GCCGAGGCCAGGCCCGCCGCCGCGCAGCGCCAGGACCGCGATGCCGCCCGCAAGGCCTGGCAGGCGCGTCTC
AACGAATTGTCCGGGAAGAACCGCATGCCGCGCTCGCGGCGCCGCGCGCAAGCCTATCTCTGA
Translation:
MVTHFLSESGQAACGRGDSNVNGSSDVGQVSCKTCRRTNAFAQAQENAAPASAPVTPTAAAPVTDKAAPRPK
AEARPAAAQRQDRDAARKAWQARLNELSGKNRMPRSRRRAQAYL*
AnnotationID:4989GeneID:4984
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 07:07:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1228
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9968




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36494




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4984_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4984
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7389
                           PA1228_tr
                           translation of PA1228
                           116
                           98.27
                           98.27
                           0
                           578.0
     

     
     
191284
                           gb|AAG04617.1|AE004552_7
                           (AE004552) hypothetical protein PA1228 [Pseudomonas aeruginosa PAO1]
                           116
                           98.27
                           98.27
                           0
                           578.0
     

     






      

          
GC ORFID: 47986How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1228Glimmer Score: 

          
Start: 649779Stop: 649429

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1228 translation of PA1228Homolog Bit Score 227.0

          
Other Homologs:  t_PA1228 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTACGCACTTCTTGAGCGAATCCGGCCAGGCAGCCTGCGGGCGCGGCGACAGCAACGTGAACGGCTCG 
AGCGATGTCGGCCAGGTCAGTTGCAAGACCTGCCGGCGCACCAACGCCTTCGCCCAGGCCCAGGAAAACGCC 
GCTCCGGCCAGTGCCCCTGTCACCCCCACCGCCGCTGCGCCAGTGACCGACAAGGCCGCGCCGCGGCCGAAA 
GCCGAGGCCAGGCCCGCCGCCGCGCAGCGCCAGGACCGCGATGCCGCCCGCAAGGCCTGGCAGGCGCGTCTC 
AACGAATTGTCCGGGAAGAACCGCATGCCGCGCTCGCGGCGCCGCGCGCAAGCCTATCTCTGA