ViewGene
Locus Name:
GeneID:
Location:

GeneID:4983
TrivialName: PA14_04180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04180
PAO1 Ortholog Locus:PA0320
Sequence Length:351
Protein Length:116
Start: 374152
Stop: 374502
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03709.1|AE004470_3 (AE004470) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGAAACTTCGTCACCTGCCCCTCATCGCTGCCATCGGCCTGTTCTCCACCGTCACCCTGGCCGCCGGCTAT
ACCGGCCCGGGCGCTACCCCGACCACCACCACGGTGAAGGCCGCGCTGGAAGCCGCCGACGACACCCCGGTG
GTCCTCCAGGGCACCATCGTCAAGCGCATCAAGGGCGACATCTACGAGTTCCGCGATGCCACCGGCAGCATG
AAGGTGGAGATCGACGACGAAGACTTCCCGCCGATGGAAATCAACGACAAGACCCGGGTCAAGCTGACCGGC
GAAGTCGACCGCGACCTGGTCGGCCGCGAGATCGACGTCGAGTTCGTCGAAGTGATCAAGTAA
Translation:
MKLRHLPLIAAIGLFSTVTLAAGYTGPGATPTTTTVKAALEAADDTPVVLQGTIVKRIKGDIYEFRDATGSM
KVEIDDEDFPPMEINDKTRVKLTGEVDRDLVGREIDVEFVEVIK*
AnnotationID:4988GeneID:4983
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0320
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9966




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33656




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4983_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4983
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7388
                           PA0320_tr
                           translation of PA0320
                           116
                           99.99
                           99.99
                           0
                           582.0
     

     
     
191282
                           gb|AAG03709.1|AE004470_3
                           (AE004470) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           116
                           99.99
                           99.99
                           0
                           582.0
     

     
     
191283
                           gb|AAN70638.1|AE016707_8
                           (AE016793) conserved hypothetical protein TIGR00156 [Pseudomonas putida KT2440]
                           137
                           53.28
                           64.96
                           23
                           346.0
     

     






      

          
GC ORFID: 47985How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0320Glimmer Score: 

          
Start: 6175494Stop: 6175844

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0320 translation of PA0320Homolog Bit Score 228.0

          
Other Homologs:  t_PA0320 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTTCGTCACCTGCCCCTCATCGCTGCCATCGGCCTGTTCTCCACCGTCACCCTGGCCGCCGGCTAT 
ACCGGCCCGGGCGCTACCCCGACCACCACCACGGTGAAGGCCGCGCTGGAAGCCGCCGACGACACCCCGGTG 
GTCCTCCAGGGCACCATCGTCAAGCGCATCAAGGGCGACATCTACGAGTTCCGCGATGCCACCGGCAGCATG 
AAGGTGGAGATCGACGACGAAGACTTCCCGCCGATGGAAATCAACGACAAGACCCGGGTCAAGCTGACCGGC 
GAAGTCGACCGCGACCTGGTCGGCCGCGAGATCGACGTCGAGTTCGTCGAAGTGATCAAGTAA