ViewGene
Locus Name:
GeneID:
Location:

GeneID:4982
TrivialName: PA14_36280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36280
PAO1 Ortholog Locus:PA2198
Sequence Length:345
Protein Length:114
Start: 3231517
Stop: 3231173
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05586.1|AE004646_7 (AE004646) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/114 (99%), Positives = 114/114 (100%)
Sequence:
ATGAACCAGGCGATCCGCGTGGTAGCGCTGTTGCAGGCGCGCGAGGGCAGGGCGGCGGAGGTCGAGCGGCTG
CTGCTGGCCTGCGTGCAGCCGTCGCGGGCCGAGGACGGCTGTCTGTCcTACGTCCTGCACCGGAGCCTCGAC
GAGGCCGGGCGCTTCGTCTTCGTCGAACGCTGGGCCGACCGCGACGCCATCGAGCGGCACCGACGGATGCCG
CACTACAGGGCGATGGCCGATGCCGTCGCCGATCTCCTGGCGGACCGCCAGGTGTTCCTTCTCGAGGAACTG
CCAGCGGCCAGCCTGTCTCCGGTAGATCCGGAACCTACAAGACCCCACGAGGAGTGA
Translation:
MNQAIRVVALLQAREGRAAEVERLLLACVQPSRAEDGCLSYVLHRSLDEAGRFVFVERWADRDAIERHRRMP
HYRAMADAVADLLADRQVFLLEELPAASLSPVDPEPTRPHEE*
AnnotationID:4987GeneID:4982
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:25
Gene Name:
Confidence Code:3
GeneProduct:putative antibiotic biosynthesis monooxygenase
Cell Localization:()
Synonyms:PA2198
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03992
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03992, ABM, Antibiotic biosynthesis monooxygenase.
CD-Length = 64 residues, 100.0% aligned
Score = 64.4 bits (157), Expect = 3e-12
Identities = 30/64 (46%), Positives = 38/64 (59%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9964




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32539




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4928_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4982
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7387
                           PA2198_tr
                           translation of PA2198
                           114
                           99.12
                           99.99
                           0
                           580.0
     

     
     
191280
                           gb|AAG05586.1|AE004646_7
                           (AE004646) hypothetical protein PA2198 [Pseudomonas aeruginosa PAO1]
                           114
                           99.12
                           99.99
                           0
                           580.0
     

     
     
191281
                           gb|AAN68093.1|AE016441_5
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           115
                           60.00
                           79.13
                           4
                           350.0
     

     






      

          
GC ORFID: 47984How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2198Glimmer Score: 

          
Start: 1722399Stop: 1722743

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2198 translation of PA2198Homolog Bit Score 228.0

          
Other Homologs:  t_PA2198 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGGCGATCCGCGTGGTAGCGCTGTTGCAGGCGCGCGAGGGCAGGGCGGCGGAGGTCGAGCGGCTG 
CTGCTGGCCTGCGTGCAGCCGTCGCGGGCCGAGGACGGCTGTCTGTCcTACGTCCTGCACCGGAGCCTCGAC 
GAGGCCGGGCGCTTCGTCTTCGTCGAACGCTGGGCCGACCGCGACGCCATCGAGCGGCACCGACGGATGCCG 
CACTACAGGGCGATGGCCGATGCCGTCGCCGATCTCCTGGCGGACCGCCAGGTGTTCCTTCTCGAGGAACTG 
CCAGCGGCCAGCCTGTCTCCGGTAGATCCGGAACCTACAAGACCCCACGAGGAGTGA