ViewGene
Locus Name:
GeneID:
Location:

GeneID:4981
TrivialName: PA14_46000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46000
PAO1 Ortholog Locus:PA1426
Sequence Length:357
Protein Length:118
Start: 4091588
Stop: 4091232
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04815.1|AE004572_3 (AE004572) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
GTGGCTGAAACCGATGGCGAGGAGTTTGTCGCTGACTGCCAGGCACAGCGGTATGGCGTCTGCCGTGCGGTA
GCGCCAGCGACATTCGCCGCTGGCGAGGTCGCGTACCTCGACCTGACCATCGACCAGCGCCAGTGCGATCCA
TTGTCCGCCGGGCAACGGCGCGAAGGCGCTGACCTGGGCGGACAGGGTCGCGCCCCAGAGCGTGCCGCGGCT
CTCCAGGTCGTAGCAGGTCAGGCGCTGGGTACCGTAGGCGTGATGCGGCGAGTTGTAGACCTTGGCGTTGAG
CAGCAGGCGATTGCCCAGCAGGCAGCCGTGCAGGTTGTTGAAGTGCTCCGGGTGGCGCTCCAGGCGTAG
Translation:
MAETDGEEFVADCQAQRYGVCRAVAPATFAAGEVAYLDLTIDQRQCDPLSAGQRREGADLGGQGRAPERAAA
LQVVAGQALGTVGVMRRVVDLGVEQQAIAQQAAVQVVEVLRVALQA*
AnnotationID:4986GeneID:4981
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1426
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15232




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4981
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7386
                           PA1426_tr
                           translation of PA1426
                           118
                           99.99
                           99.99
                           0
                           581.0
     

     
     
191279
                           gb|AAG04815.1|AE004572_3
                           (AE004572) hypothetical protein PA1426 [Pseudomonas aeruginosa PAO1]
                           118
                           99.15
                           99.99
                           0
                           578.0
     

     






      

          
GC ORFID: 47983How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1426Glimmer Score: 

          
Start: 862321Stop: 862677

          
Length: 357


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1426 translation of PA1426Homolog Bit Score 228.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGCTGAAACCGATGGCGAGGAGTTTGTCGCTGACTGCCAGGCACAGCGGTATGGCGTCTGCCGTGCGGTA 
GCGCCAGCGACATTCGCCGCTGGCGAGGTCGCGTACCTCGACCTGACCATCGACCAGCGCCAGTGCGATCCA 
TTGTCCGCCGGGCAACGGCGCGAAGGCGCTGACCTGGGCGGACAGGGTCGCGCCCCAGAGCGTGCCGCGGCT 
CTCCAGGTCGTAGCAGGTCAGGCGCTGGGTACCGTAGGCGTGATGCGGCGAGTTGTAGACCTTGGCGTTGAG 
CAGCAGGCGATTGCCCAGCAGGCAGCCGTGCAGGTTGTTGAAGTGCTCCGGGTGGCGCTCCAGGCGTAG