ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4975

TrivialName: PA14_39100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39100

PAO1 Ortholog Locus: PA1966

Sequence Length: 372

Protein Length: 123

Start: 3484730

Stop: 3484359

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05354.1|AE004623_4 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 121/123 (98%), Positives = 121/123 (98%)

Sequence:

ATGCCGCATCTCGTTATCGAAGCCACTGCCAACCTCCGCCTCGAAACGTCCCCCGGCGAACTGCTGGAGCAG
GCCAATGCCGCGCTGTTCGCTTCCGGGCAATTCGGCGAGGCGGACATCAAGTCGCGCTTCGTCACCCTGGAG
GCCTACCGGCAGGGAACCGCAGCGGTCGAGCGCGCCTACCTGCATGCCTGCCTGTCGATCCTCGACGGGCGC
GACGCGGCGACCCGCCAGGCGCTGGGCGAGGTGCTGGGCGAGGTGCTCGCCGGAGCGGTGGCGGGCGGCGGC
GAGGAGGGCGTGCAGGTCAGCGTCGAAGTGCGCGAGATGGAGCGCGCCAGCTACGCCAAGCGCGTCGTCGCC
CGGCAGCGCTGA

Translation:

MPHLVIEATANLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGR
DAATRQALGEVLGEVLAGAVAGGGEEGVQVSVEVREMERASYAKRVVARQR*

AnnotationID:4980 GeneID:4975

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 15:03:22

Gene Name:

Confidence Code: 3

GeneProduct: putative 5-carboxymethyl-2-hydroxymuconate isomerase

Cell Localization: ()

Synonyms: PA1966

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3232

Secondary Functional Category(ies): transport of small molecules

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3232, HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase 
[Amino acid transport and metabolism]
CD-Length = 127 residues,  97.6% aligned
Score =  138 bits (348), Expect = 2e-34
Identities = 49/124 (39%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Genomic Context:

Comment:

ReferenceID:9950

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:27091

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32754

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4975_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4975

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7378 PA1966_tr translation of PA1966 123 98.37 98.37 0 585.0

191238 gb|AAG05354.1|AE004623_4 (AE004623) hypothetical protein PA1966 [Pseudomonas aeruginosa PAO1] 123 98.37 98.37 0 585.0

GC ORFID: `47977`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1966`	Glimmer Score:
Start: `1469181`	Stop: `1469552`
Length: `372`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1966 translation of PA1966`	Homolog Bit Score `229.0`
Other Homologs: `t_PA1966 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCCGCATCTCGTTATCGAAGCCACTGCCAACCTCCGCCTCGAAACGTCCCCCGGCGAACTGCTGGAGCAG GCCAATGCCGCGCTGTTCGCTTCCGGGCAATTCGGCGAGGCGGACATCAAGTCGCGCTTCGTCACCCTGGAG GCCTACCGGCAGGGAACCGCAGCGGTCGAGCGCGCCTACCTGCATGCCTGCCTGTCGATCCTCGACGGGCGC GACGCGGCGACCCGCCAGGCGCTGGGCGAGGTGCTGGGCGAGGTGCTCGCCGGAGCGGTGGCGGGCGGCGGC GAGGAGGGCGTGCAGGTCAGCGTCGAAGTGCGCGAGATGGAGCGCGCCAGCTACGCCAAGCGCGTCGTCGCC CGGCAGCGCTGA`