ViewGene
Locus Name:
GeneID:
Location:

GeneID:4974
TrivialName: PA14_42200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42200
PAO1 Ortholog Locus:PA1728
Sequence Length:342
Protein Length:113
Start: 3763689
Stop: 3763348
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05117.1|AE004599_2 (AE004599) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
ATGGAAAAGCCCTTCTCGGATGATGTCAGCGTGAATGTCCTGCGTCGCATGAAAGAAGGCGGCTTCGACTTC
GCGCGCATCCATCCCATCGACTTCTTCGCCATCTTTCCCAGTGAGCGGGAGGCCCGCCAGGCAGCGGGCCAG
TTTCGCGGCGAATCCCTCAGGGCCCAGGTCGTCGCTCGCGACGATGGCTCCTGGAACCTGCAGGTCAGCAAG
GTGATGTACGCCACCCATGCCGCCATCGGTGCCTTCGAACACGACCTGGAGGAAGTCGTGGTGCCGCTGGGC
GGCGTGCTGGACGGGTGGGGCGTGACCCAGGAGGTCACTTCGCTGCGTCCGTGA
Translation:
MEKPFSDDVSVNVLRRMKEGGFDFARIHPIDFFAIFPSEREARQAAGQFRGESLRAQVVARDDGSWNLQVSK
VMYATHAAIGAFEHDLEEVVVPLGGVLDGWGVTQEVTSLRP*
AnnotationID:4979GeneID:4974
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1728
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9948




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4974
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7377
                           PA1728_tr
                           translation of PA1728
                           113
                           99.99
                           99.99
                           0
                           584.0
     

     
     
191235
                           gb|AAG05117.1|AE004599_2
                           (AE004599) hypothetical protein PA1728 [Pseudomonas aeruginosa PAO1]
                           113
                           99.99
                           99.99
                           0
                           584.0
     

     
     
191236
                           gb|AAO55575.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           113
                           61.94
                           76.99
                           0
                           382.0
     

     
     
191237
                           gb|AAN67459.1|AE016373_1
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           114
                           57.89
                           73.68
                           5
                           349.0
     

     






      

          
GC ORFID: 47976How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1728Glimmer Score: 

          
Start: 1190220Stop: 1190561

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1728 translation of PA1728Homolog Bit Score 229.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene869 (ORF: BLASTX 152.0), t_PA1728 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAAGCCCTTCTCGGATGATGTCAGCGTGAATGTCCTGCGTCGCATGAAAGAAGGCGGCTTCGACTTC 
GCGCGCATCCATCCCATCGACTTCTTCGCCATCTTTCCCAGTGAGCGGGAGGCCCGCCAGGCAGCGGGCCAG 
TTTCGCGGCGAATCCCTCAGGGCCCAGGTCGTCGCTCGCGACGATGGCTCCTGGAACCTGCAGGTCAGCAAG 
GTGATGTACGCCACCCATGCCGCCATCGGTGCCTTCGAACACGACCTGGAGGAAGTCGTGGTGCCGCTGGGC 
GGCGTGCTGGACGGGTGGGGCGTGACCCAGGAGGTCACTTCGCTGCGTCCGTGA